Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRN3 Sequence: fasta or formatted (708aa) NCBI GI: 153792651
Description:

leucine rich repeat neuronal 3

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [708aa] leucine rich repeat neuronal 3
alt mRNA [708aa] leucine rich repeat neuronal 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         32           2
 C cysteine            2.4         17           1
 D aspartate           4.2         30           1
 E glutamate           5.2         37           2
 F phenylalanine       3.0         21           2
 G glycine             4.4         31           2
 H histidine           2.3         16           1
 I isoleucine          8.2         58           2
 K lysine              6.2         44           2
 L leucine            13.4         95           3
 M methionine          2.7         19           2
 N asparagine          9.0         64           2
 P proline             6.2         44           2
 Q glutamine           2.7         19           1
 R arginine            3.7         26           2
 S serine              7.3         52           2
 T threonine           5.5         39           3
 V valine              5.5         39           2
 W tryptophan          1.0          7           1
 Y tyrosine            2.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat neuronal 3 
LRRN3                 1.000   leucine rich repeat neuronal 3 
LRRN3                 1.000   leucine rich repeat neuronal 3 
LRRN1                 0.540   leucine rich repeat neuronal 1 
LRRN2                 0.438   leucine rich repeat neuronal 2 
LRRN2                 0.438   leucine rich repeat neuronal 2 
LINGO2                0.104   leucine rich repeat and Ig domain containing 2 [Homo...
LINGO1                0.099   leucine-rich repeat neuronal 6A 
LINGO3                0.094   leucine rich repeat and Ig domain containing 3 [Hom...
LRRC4C                0.086   netrin-G1 ligand 
LINGO4                0.081   leucine rich repeat and Ig domain containing 4 [Homo...
LRRC70                0.080   synleurin 
LRRC4B                0.075   leucine rich repeat containing 4B 
LRFN5                 0.074   leucine rich repeat and fibronectin type III domain ...
LRRC4                 0.074   leucine rich repeat containing 4 
LRIG1                 0.074   leucine-rich repeats and immunoglobulin-like domains...
LRIG2                 0.074   leucine-rich repeats and immunoglobulin-like domains ...
LRRC15                0.073   leucine rich repeat containing 15 isoform a 
LRRC15                0.072   leucine rich repeat containing 15 isoform b 
PXDN                  0.064   peroxidasin 
LRFN1                 0.064   leucine rich repeat and fibronectin type III domain...
GP5                   0.063   glycoprotein V (platelet) 
LRFN4                 0.062   leucine rich repeat and fibronectin type III domain ...
LRIG3                 0.061   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.061   leucine-rich repeats and immunoglobulin-like domain...
FLRT1                 0.061   fibronectin leucine rich transmembrane protein 1 [Ho...
CHADL                 0.061   chondroadherin-like 
LRRTM1                0.060   leucine rich repeat transmembrane neuronal 1 
LRRTM3                0.060   leucine rich repeat transmembrane neuronal 3 
FLRT2                 0.060   fibronectin leucine rich transmembrane protein 2 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press