BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|13129128 hypothetical protein LOC79095 [Homo sapiens] (83 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|13129128 hypothetical protein LOC79095 [Homo sapiens] 171 1e-43 gi|62241001 conserved helix-loop-helix ubiquitous kinase [Homo s... 32 0.083 gi|16554604 mitochondrial ribosomal protein S23 [Homo sapiens] 31 0.24 gi|109255234 centrosomal protein 290kDa [Homo sapiens] 30 0.32 gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens] 30 0.41 gi|148746195 trichohyalin [Homo sapiens] 30 0.54 gi|22758136 MAP7 domain containing 2 [Homo sapiens] 29 0.70 gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Hom... 29 0.92 gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Hom... 29 0.92 gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 28 1.2 gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 28 1.2 gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 28 2.0 gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 28 2.0 gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo ... 28 2.0 gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens] 28 2.0 gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 28 2.0 gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 27 2.7 gi|61699226 pulmonary surfactant-associated protein D precursor ... 27 2.7 gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 27 2.7 gi|186700629 calcium/calmodulin-dependent serine protein kinase ... 27 2.7 gi|33946313 ninein isoform 4 [Homo sapiens] 27 2.7 gi|33946321 ninein isoform 5 [Homo sapiens] 27 2.7 gi|148536871 ninein isoform 1 [Homo sapiens] 27 2.7 gi|148536869 ninein isoform 2 [Homo sapiens] 27 2.7 gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 27 2.7 gi|41352705 kinesin family member 3C [Homo sapiens] 27 2.7 gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 27 2.7 gi|154090997 coiled-coil domain containing 13 [Homo sapiens] 27 2.7 gi|48762934 alpha 2 type I collagen [Homo sapiens] 27 3.5 gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 27 3.5 >gi|13129128 hypothetical protein LOC79095 [Homo sapiens] Length = 83 Score = 171 bits (432), Expect = 1e-43 Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELL 60 MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELL Sbjct: 1 MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELL 60 Query: 61 ESNRQTRLEFQQQLGEAPSDASP 83 ESNRQTRLEFQQQLGEAPSDASP Sbjct: 61 ESNRQTRLEFQQQLGEAPSDASP 83 >gi|62241001 conserved helix-loop-helix ubiquitous kinase [Homo sapiens] Length = 745 Score = 32.3 bits (72), Expect = 0.083 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 12 VEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQ-ELLESNRQTRLEF 70 ++A E EE AE I + DQI S + E + R Q +L+ES Q ++ Sbjct: 508 LKAWKEMEEKAIHYAEVGVIGYLEDQIMSLHAEIMELQKSPYGRRQGDLMESLEQRAIDL 567 Query: 71 QQQLGEAPSDAS 82 +QL PSD S Sbjct: 568 YKQLKHRPSDHS 579 >gi|16554604 mitochondrial ribosomal protein S23 [Homo sapiens] Length = 190 Score = 30.8 bits (68), Expect = 0.24 Identities = 16/39 (41%), Positives = 21/39 (53%) Query: 44 HLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSDAS 82 H+ K++HL R Q LE N + Q Q EAP+D S Sbjct: 146 HVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAPADQS 184 >gi|109255234 centrosomal protein 290kDa [Homo sapiens] Length = 2479 Score = 30.4 bits (67), Expect = 0.32 Identities = 11/35 (31%), Positives = 24/35 (68%) Query: 27 EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLE 61 EY + +++ Q ++ +D L+++NDH ++QEL + Sbjct: 256 EYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTD 290 >gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens] Length = 432 Score = 30.0 bits (66), Expect = 0.41 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 2 SGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLE 61 SGP+ +L + +A + G + + ++ +I L LEE + +LQE + Sbjct: 161 SGPDNELSILGKAFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEE----IQEKLQESVT 216 Query: 62 SNRQTRLEFQQQLGEAPSDAS 82 + Q +L EAPS +S Sbjct: 217 WKEAPEAQMQGELLEAPSSSS 237 >gi|148746195 trichohyalin [Homo sapiens] Length = 1943 Score = 29.6 bits (65), Expect = 0.54 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 36 DQINSCLDH-LEEKNDHLHARLQELLESNRQTRLEFQQQLGE 76 +Q+ SC H EE D R +ELLE R+ R E QQQ E Sbjct: 191 EQLQSCKGHETEEFPDEEQLRRRELLELRRKGREEKQQQRRE 232 >gi|22758136 MAP7 domain containing 2 [Homo sapiens] Length = 732 Score = 29.3 bits (64), Expect = 0.70 Identities = 12/31 (38%), Positives = 22/31 (70%) Query: 46 EEKNDHLHARLQELLESNRQTRLEFQQQLGE 76 EE+ L AR Q++LE ++ RL++++Q+ E Sbjct: 63 EEREKCLAAREQQILEKQKRARLQYEKQMEE 93 >gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Homo sapiens] Length = 279 Score = 28.9 bits (63), Expect = 0.92 Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 6 GDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNR 64 G G + AEG+ A I + + + SC L+E ++ L +R+Q +S+R Sbjct: 205 GSRGFLIPRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSR 263 >gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Homo sapiens] Length = 248 Score = 28.9 bits (63), Expect = 0.92 Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 6 GDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNR 64 G G + AEG+ A I + + + SC L+E ++ L +R+Q +S+R Sbjct: 174 GSRGFLIPRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSR 232 >gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo sapiens] Length = 2346 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/45 (33%), Positives = 24/45 (53%) Query: 38 INSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSDAS 82 ++S L HL + L +L++ ++ N RL+ QQQL AS Sbjct: 2040 LSSDLSHLVAEVRALRGQLEQSIQGNNCLRLQLQQQLESGAGKAS 2084 >gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] Length = 1979 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%) Query: 33 SMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQLGE 76 S + Q+N+ +HLEE+ H Q+++E Q++++ Q L E Sbjct: 896 SEVSQLNTIKEHLEEEIKH----HQKIIEDQNQSKMQLLQSLQE 935 >gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sapiens] Length = 1843 Score = 27.7 bits (60), Expect = 2.0 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 19 EEDGFGEAEYAAINSMLDQ-INSCLDHLEEKNDHLHARLQELLESNRQTRLEFQ 71 +E ++ Y + S L+ + L+ EEK L ARL+E N+Q R E + Sbjct: 945 DEQSTDDSRYKLLESKLESTLKKSLEIKEEKIAALEARLEESTNYNQQLRQELK 998 Score = 25.8 bits (55), Expect = 7.8 Identities = 11/34 (32%), Positives = 21/34 (61%) Query: 31 INSMLDQINSCLDHLEEKNDHLHARLQELLESNR 64 +N+ + ++ +LEE+N HL ++Q L+ NR Sbjct: 1306 LNNQCELLSQLKGNLEEENRHLLDQIQTLMLQNR 1339 >gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] Length = 1028 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 2 SGPNGDLGMPVEAGAEGEEDGFGE 25 SGP+GD G P E G GE+ G+ Sbjct: 388 SGPSGDEGQPGEPGPPGEKGEAGD 411 >gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo sapiens] Length = 396 Score = 27.7 bits (60), Expect = 2.0 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 6/84 (7%) Query: 5 NGDLGMPVEAG--AEGEEDGFGEAEYAA-INSMLDQINSCLDHLEEKNDHLHAR---LQE 58 N +LG + G A+ E + + +Y+ + S D++N + L+E+ + + + LQ+ Sbjct: 168 NQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQ 227 Query: 59 LLESNRQTRLEFQQQLGEAPSDAS 82 L+ RQ ++QQQ +A + ++ Sbjct: 228 QLKETRQQLAQYQQQQSQASAPST 251 >gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens] Length = 625 Score = 27.7 bits (60), Expect = 2.0 Identities = 15/48 (31%), Positives = 22/48 (45%) Query: 25 EAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72 +AEY + D +NS L N L +LQE+ + Q E Q+ Sbjct: 321 QAEYEDLMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQE 368 >gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] Length = 841 Score = 27.7 bits (60), Expect = 2.0 Identities = 15/48 (31%), Positives = 22/48 (45%) Query: 25 EAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72 +AEY + D +NS L N L +LQE+ + Q E Q+ Sbjct: 374 QAEYEDLMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQE 421 >gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sapiens] Length = 693 Score = 27.3 bits (59), Expect = 2.7 Identities = 12/44 (27%), Positives = 26/44 (59%) Query: 30 AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73 A+ S+++Q+ HL ++ + L +LQ +E+N+ L ++Q Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335 >gi|61699226 pulmonary surfactant-associated protein D precursor [Homo sapiens] Length = 375 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Query: 3 GPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLE 46 G GD G+P + GA+GE G + A++ ++ + + HL+ Sbjct: 202 GLKGDKGIPGDKGAKGES---GLPDVASLRQQVEALQGQVQHLQ 242 >gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C isoform 1 [Homo sapiens] Length = 693 Score = 27.3 bits (59), Expect = 2.7 Identities = 12/44 (27%), Positives = 26/44 (59%) Query: 30 AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73 A+ S+++Q+ HL ++ + L +LQ +E+N+ L ++Q Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335 >gi|186700629 calcium/calmodulin-dependent serine protein kinase isoform 3 [Homo sapiens] Length = 897 Score = 27.3 bits (59), Expect = 2.7 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Query: 5 NGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQE-----L 59 N G P E + ED + + L++I++ D E+ D LH+ Q+ L Sbjct: 318 NSFYGDPPEELPDFSEDPTSSGAVSQVLDSLEEIHALTDCSEKDLDFLHSVFQDQHLHTL 377 Query: 60 LESNRQTRLEFQQQLGEAPSDA 81 L+ + + Q+ PSDA Sbjct: 378 LDLYDKINTKSSPQIRNPPSDA 399 >gi|33946313 ninein isoform 4 [Homo sapiens] Length = 2096 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 27 EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72 E AA+ M++ + + L+ KN L EL + N Q + + Q+ Sbjct: 1570 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1615 >gi|33946321 ninein isoform 5 [Homo sapiens] Length = 2090 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 27 EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72 E AA+ M++ + + L+ KN L EL + N Q + + Q+ Sbjct: 1564 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1609 >gi|148536871 ninein isoform 1 [Homo sapiens] Length = 2046 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 27 EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72 E AA+ M++ + + L+ KN L EL + N Q + + Q+ Sbjct: 1564 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1609 >gi|148536869 ninein isoform 2 [Homo sapiens] Length = 2133 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 27 EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72 E AA+ M++ + + L+ KN L EL + N Q + + Q+ Sbjct: 1564 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1609 >gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapiens] Length = 693 Score = 27.3 bits (59), Expect = 2.7 Identities = 12/44 (27%), Positives = 26/44 (59%) Query: 30 AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73 A+ S+++Q+ HL ++ + L +LQ +E+N+ L ++Q Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335 >gi|41352705 kinesin family member 3C [Homo sapiens] Length = 793 Score = 27.3 bits (59), Expect = 2.7 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 26 AEYAAINS-MLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQL 74 A+Y A+ S +L + +DH E+ L + QE+ E R+ R E QQ++ Sbjct: 512 AKYKAMESKLLIGGRNIMDHTNEQQKMLELKRQEIAEQKRRER-EMQQEM 560 >gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapiens] Length = 693 Score = 27.3 bits (59), Expect = 2.7 Identities = 12/44 (27%), Positives = 26/44 (59%) Query: 30 AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73 A+ S+++Q+ HL ++ + L +LQ +E+N+ L ++Q Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335 >gi|154090997 coiled-coil domain containing 13 [Homo sapiens] Length = 715 Score = 27.3 bits (59), Expect = 2.7 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 2 SGPNGDLGMPVE------AGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHAR 55 + P G+P G+E ++ F + + S ++++ + L E+N+ L A Sbjct: 618 AAPRTKTGLPTSNNRHNPTGSEKKDPSFAQLSDVPVESQMEELTTRLAIQVEENEMLKAA 677 Query: 56 LQELLESNRQTRLEFQQQLGEAPS 79 L L + + + LG+ S Sbjct: 678 LGSALRGKEEDFRMYHEILGQVKS 701 >gi|48762934 alpha 2 type I collagen [Homo sapiens] Length = 1366 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 2 SGPNGDLGMPVEAGAEGEEDGFGE 25 +GP+G G+P E GA G G GE Sbjct: 633 AGPSGPSGLPGERGAAGIPGGKGE 656 >gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] Length = 3907 Score = 26.9 bits (58), Expect = 3.5 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 7 DLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQT 66 +L + V+ AE + E E + L+Q L++ E+ LH +L E+ + T Sbjct: 2184 ELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL-EIQKKESTT 2242 Query: 67 RLEFQQQ 73 RL+ +Q Sbjct: 2243 RLQELEQ 2249 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.308 0.129 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,455,349 Number of Sequences: 37866 Number of extensions: 136683 Number of successful extensions: 1356 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 1211 Number of HSP's gapped (non-prelim): 165 length of query: 83 length of database: 18,247,518 effective HSP length: 55 effective length of query: 28 effective length of database: 16,164,888 effective search space: 452616864 effective search space used: 452616864 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.