Guide to the Human Genome
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Search of human proteins with 13129128

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13129128 hypothetical protein LOC79095 [Homo sapiens]
         (83 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13129128 hypothetical protein LOC79095 [Homo sapiens]              171   1e-43
gi|62241001 conserved helix-loop-helix ubiquitous kinase [Homo s...    32   0.083
gi|16554604 mitochondrial ribosomal protein S23 [Homo sapiens]         31   0.24 
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 30   0.32 
gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]           30   0.41 
gi|148746195 trichohyalin [Homo sapiens]                               30   0.54 
gi|22758136 MAP7 domain containing 2 [Homo sapiens]                    29   0.70 
gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Hom...    29   0.92 
gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Hom...    29   0.92 
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ...    28   1.2  
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]     28   1.2  
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa...    28   2.0  
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]        28   2.0  
gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo ...    28   2.0  
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]        28   2.0  
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]        28   2.0  
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap...    27   2.7  
gi|61699226 pulmonary surfactant-associated protein D precursor ...    27   2.7  
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C...    27   2.7  
gi|186700629 calcium/calmodulin-dependent serine protein kinase ...    27   2.7  
gi|33946313 ninein isoform 4 [Homo sapiens]                            27   2.7  
gi|33946321 ninein isoform 5 [Homo sapiens]                            27   2.7  
gi|148536871 ninein isoform 1 [Homo sapiens]                           27   2.7  
gi|148536869 ninein isoform 2 [Homo sapiens]                           27   2.7  
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi...    27   2.7  
gi|41352705 kinesin family member 3C [Homo sapiens]                    27   2.7  
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi...    27   2.7  
gi|154090997 coiled-coil domain containing 13 [Homo sapiens]           27   2.7  
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     27   3.5  
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]         27   3.5  

>gi|13129128 hypothetical protein LOC79095 [Homo sapiens]
          Length = 83

 Score =  171 bits (432), Expect = 1e-43
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELL 60
          MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELL
Sbjct: 1  MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELL 60

Query: 61 ESNRQTRLEFQQQLGEAPSDASP 83
          ESNRQTRLEFQQQLGEAPSDASP
Sbjct: 61 ESNRQTRLEFQQQLGEAPSDASP 83


>gi|62241001 conserved helix-loop-helix ubiquitous kinase [Homo
           sapiens]
          Length = 745

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 12  VEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQ-ELLESNRQTRLEF 70
           ++A  E EE     AE   I  + DQI S    + E     + R Q +L+ES  Q  ++ 
Sbjct: 508 LKAWKEMEEKAIHYAEVGVIGYLEDQIMSLHAEIMELQKSPYGRRQGDLMESLEQRAIDL 567

Query: 71  QQQLGEAPSDAS 82
            +QL   PSD S
Sbjct: 568 YKQLKHRPSDHS 579


>gi|16554604 mitochondrial ribosomal protein S23 [Homo sapiens]
          Length = 190

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 44  HLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSDAS 82
           H+  K++HL  R Q  LE N   +   Q Q  EAP+D S
Sbjct: 146 HVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAPADQS 184


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 27  EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLE 61
           EY  + +++ Q ++ +D L+++NDH   ++QEL +
Sbjct: 256 EYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTD 290


>gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]
          Length = 432

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 2   SGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLE 61
           SGP+ +L +  +A + G +      +    ++   +I   L  LEE    +  +LQE + 
Sbjct: 161 SGPDNELSILGKAFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEE----IQEKLQESVT 216

Query: 62  SNRQTRLEFQQQLGEAPSDAS 82
                  + Q +L EAPS +S
Sbjct: 217 WKEAPEAQMQGELLEAPSSSS 237


>gi|148746195 trichohyalin [Homo sapiens]
          Length = 1943

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 36  DQINSCLDH-LEEKNDHLHARLQELLESNRQTRLEFQQQLGE 76
           +Q+ SC  H  EE  D    R +ELLE  R+ R E QQQ  E
Sbjct: 191 EQLQSCKGHETEEFPDEEQLRRRELLELRRKGREEKQQQRRE 232


>gi|22758136 MAP7 domain containing 2 [Homo sapiens]
          Length = 732

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 46 EEKNDHLHARLQELLESNRQTRLEFQQQLGE 76
          EE+   L AR Q++LE  ++ RL++++Q+ E
Sbjct: 63 EEREKCLAAREQQILEKQKRARLQYEKQMEE 93


>gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 279

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 6   GDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNR 64
           G  G  +   AEG+         A I  + + + SC   L+E ++ L +R+Q   +S+R
Sbjct: 205 GSRGFLIPRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSR 263


>gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Homo
           sapiens]
          Length = 248

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 6   GDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNR 64
           G  G  +   AEG+         A I  + + + SC   L+E ++ L +R+Q   +S+R
Sbjct: 174 GSRGFLIPRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDELSEQLESRVQLCTKSSR 232


>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
            sapiens]
          Length = 2346

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 38   INSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSDAS 82
            ++S L HL  +   L  +L++ ++ N   RL+ QQQL      AS
Sbjct: 2040 LSSDLSHLVAEVRALRGQLEQSIQGNNCLRLQLQQQLESGAGKAS 2084


>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
          Length = 1979

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 33  SMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQLGE 76
           S + Q+N+  +HLEE+  H     Q+++E   Q++++  Q L E
Sbjct: 896 SEVSQLNTIKEHLEEEIKH----HQKIIEDQNQSKMQLLQSLQE 935


>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
           sapiens]
          Length = 1843

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 19  EEDGFGEAEYAAINSMLDQ-INSCLDHLEEKNDHLHARLQELLESNRQTRLEFQ 71
           +E    ++ Y  + S L+  +   L+  EEK   L ARL+E    N+Q R E +
Sbjct: 945 DEQSTDDSRYKLLESKLESTLKKSLEIKEEKIAALEARLEESTNYNQQLRQELK 998



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 31   INSMLDQINSCLDHLEEKNDHLHARLQELLESNR 64
            +N+  + ++    +LEE+N HL  ++Q L+  NR
Sbjct: 1306 LNNQCELLSQLKGNLEEENRHLLDQIQTLMLQNR 1339


>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
          Length = 1028

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 2   SGPNGDLGMPVEAGAEGEEDGFGE 25
           SGP+GD G P E G  GE+   G+
Sbjct: 388 SGPSGDEGQPGEPGPPGEKGEAGD 411


>gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo
           sapiens]
          Length = 396

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 5   NGDLGMPVEAG--AEGEEDGFGEAEYAA-INSMLDQINSCLDHLEEKNDHLHAR---LQE 58
           N +LG  +  G  A+ E +   + +Y+  + S  D++N  +  L+E+ + + +    LQ+
Sbjct: 168 NQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQ 227

Query: 59  LLESNRQTRLEFQQQLGEAPSDAS 82
            L+  RQ   ++QQQ  +A + ++
Sbjct: 228 QLKETRQQLAQYQQQQSQASAPST 251


>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
          Length = 625

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 25  EAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72
           +AEY  +    D +NS L      N  L  +LQE+ +   Q   E Q+
Sbjct: 321 QAEYEDLMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQE 368


>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
          Length = 841

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 25  EAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72
           +AEY  +    D +NS L      N  L  +LQE+ +   Q   E Q+
Sbjct: 374 QAEYEDLMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQE 421


>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
           sapiens]
          Length = 693

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 30  AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73
           A+ S+++Q+     HL ++ + L  +LQ  +E+N+   L  ++Q
Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335


>gi|61699226 pulmonary surfactant-associated protein D precursor
           [Homo sapiens]
          Length = 375

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 3   GPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLE 46
           G  GD G+P + GA+GE    G  + A++   ++ +   + HL+
Sbjct: 202 GLKGDKGIPGDKGAKGES---GLPDVASLRQQVEALQGQVQHLQ 242


>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
           isoform 1 [Homo sapiens]
          Length = 693

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 30  AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73
           A+ S+++Q+     HL ++ + L  +LQ  +E+N+   L  ++Q
Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335


>gi|186700629 calcium/calmodulin-dependent serine protein kinase
           isoform 3 [Homo sapiens]
          Length = 897

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 5   NGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQE-----L 59
           N   G P E   +  ED       + +   L++I++  D  E+  D LH+  Q+     L
Sbjct: 318 NSFYGDPPEELPDFSEDPTSSGAVSQVLDSLEEIHALTDCSEKDLDFLHSVFQDQHLHTL 377

Query: 60  LESNRQTRLEFQQQLGEAPSDA 81
           L+   +   +   Q+   PSDA
Sbjct: 378 LDLYDKINTKSSPQIRNPPSDA 399


>gi|33946313 ninein isoform 4 [Homo sapiens]
          Length = 2096

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 27   EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72
            E AA+  M++ +   +  L+ KN  L     EL + N Q + + Q+
Sbjct: 1570 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1615


>gi|33946321 ninein isoform 5 [Homo sapiens]
          Length = 2090

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 27   EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72
            E AA+  M++ +   +  L+ KN  L     EL + N Q + + Q+
Sbjct: 1564 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1609


>gi|148536871 ninein isoform 1 [Homo sapiens]
          Length = 2046

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 27   EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72
            E AA+  M++ +   +  L+ KN  L     EL + N Q + + Q+
Sbjct: 1564 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1609


>gi|148536869 ninein isoform 2 [Homo sapiens]
          Length = 2133

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 27   EYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72
            E AA+  M++ +   +  L+ KN  L     EL + N Q + + Q+
Sbjct: 1564 ENAAVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQE 1609


>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
           sapiens]
          Length = 693

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 30  AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73
           A+ S+++Q+     HL ++ + L  +LQ  +E+N+   L  ++Q
Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335


>gi|41352705 kinesin family member 3C [Homo sapiens]
          Length = 793

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 26  AEYAAINS-MLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQL 74
           A+Y A+ S +L    + +DH  E+   L  + QE+ E  R+ R E QQ++
Sbjct: 512 AKYKAMESKLLIGGRNIMDHTNEQQKMLELKRQEIAEQKRRER-EMQQEM 560


>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
           sapiens]
          Length = 693

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query: 30  AINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQ 73
           A+ S+++Q+     HL ++ + L  +LQ  +E+N+   L  ++Q
Sbjct: 292 AVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSKEQ 335


>gi|154090997 coiled-coil domain containing 13 [Homo sapiens]
          Length = 715

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 2   SGPNGDLGMPVE------AGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHAR 55
           + P    G+P         G+E ++  F +     + S ++++ + L    E+N+ L A 
Sbjct: 618 AAPRTKTGLPTSNNRHNPTGSEKKDPSFAQLSDVPVESQMEELTTRLAIQVEENEMLKAA 677

Query: 56  LQELLESNRQTRLEFQQQLGEAPS 79
           L   L    +    + + LG+  S
Sbjct: 678 LGSALRGKEEDFRMYHEILGQVKS 701


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 2   SGPNGDLGMPVEAGAEGEEDGFGE 25
           +GP+G  G+P E GA G   G GE
Sbjct: 633 AGPSGPSGLPGERGAAGIPGGKGE 656


>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
          Length = 3907

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 7    DLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQT 66
            +L + V+  AE +     E E   +   L+Q    L++  E+   LH +L E+ +    T
Sbjct: 2184 ELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL-EIQKKESTT 2242

Query: 67   RLEFQQQ 73
            RL+  +Q
Sbjct: 2243 RLQELEQ 2249


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,455,349
Number of Sequences: 37866
Number of extensions: 136683
Number of successful extensions: 1356
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 165
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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