Guide to the Human Genome
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Name: RNF135 Sequence: fasta or formatted (432aa) NCBI GI: 37655167
Description:

ring finger protein 135 isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [210aa] ring finger protein 135 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         38           3
 C cysteine            3.9         17           2
 D aspartate           4.6         20           2
 E glutamate           6.7         29           2
 F phenylalanine       1.6          7           1
 G glycine             5.8         25           1
 H histidine           3.0         13           1
 I isoleucine          3.2         14           2
 K lysine              3.9         17           1
 L leucine            11.1         48           2
 M methionine          1.4          6           1
 N asparagine          1.9          8           1
 P proline             5.8         25           1
 Q glutamine           5.3         23           2
 R arginine            6.5         28           3
 S serine             11.1         48           4
 T threonine           3.9         17           1
 V valine              6.2         27           2
 W tryptophan          3.2         14           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 135 isoform 1 
RNF135                0.383   ring finger protein 135 isoform 2 
TRIM21                0.079   tripartite motif protein 21 
TRIM62                0.076   tripartite motif-containing 62 
TRIM65                0.076   tripartite motif-containing 65 
TRIM25                0.076   tripartite motif-containing 25 
TRIM11                0.069   tripartite motif-containing 11 
TRIM72                0.066   tripartite motif-containing 72 
TRIM60                0.061   ring finger protein 129 
TRIM75                0.060   tripartite motif-containing 75 
TRIM17                0.059   tripartite motif-containing 17 isoform 1 
TRIM17                0.059   tripartite motif-containing 17 isoform 1 
TRIML1                0.058   tripartite motif family-like 1 
TRIM64                0.057   tripartite motif-containing 64 
LOC642446             0.057   PREDICTED: tripartite motif-containing protein 64B-...
TRIM68                0.055   ring finger protein 137 
FSD1L                 0.053   fibronectin type III and SPRY domain containing 1-li...
FSD1L                 0.053   fibronectin type III and SPRY domain containing 1-l...
TRIM34                0.052   tripartite motif protein 34 isoform 1 
TRIM34                0.052   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          0.052   tripartite motif-containing 6 and tripartite motif-c...
TRIM17                0.051   tripartite motif-containing 17 isoform 2 
LOC646754             0.043   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.043   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.043   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.043   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.043   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.043   PREDICTED: tripartite motif-containing protein 64C-...
SPRYD4                0.043   SPRY domain containing 4 
TRIM8                 0.043   tripartite motif-containing 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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