Guide to the Human Genome
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Name: GOLGA6B Sequence: fasta or formatted (693aa) NCBI GI: 94538359
Description:

golgi autoantigen, golgin subfamily a, 6B

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         47           3
 C cysteine            0.6          4           1
 D aspartate           3.6         25           2
 E glutamate          15.2        105           4
 F phenylalanine       1.0          7           1
 G glycine             4.0         28           3
 H histidine           2.6         18           1
 I isoleucine          2.2         15           1
 K lysine              8.1         56           4
 L leucine            11.3         78           2
 M methionine          1.9         13           2
 N asparagine          3.2         22           2
 P proline             4.8         33           2
 Q glutamine          11.3         78           3
 R arginine            6.9         48           2
 S serine              6.1         42           3
 T threonine           4.2         29           3
 V valine              4.6         32           2
 W tryptophan          0.7          5           1
 Y tyrosine            1.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6C               0.988   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6                0.986   golgi autoantigen, golgin subfamily a, 6 
GOLGA6D               0.986   golgi autoantigen, golgin subfamily a, 6D 
LOC653061             0.329   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.326   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728080             0.305   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.299   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.298   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.293   PREDICTED: similar to hect domain and RLD 2 
LOC643699             0.291   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653061             0.278   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.276   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA8B               0.268   golgi autoantigen, golgin subfamily a, 8B 
GOLGA8A               0.268   golgi autoantigen, golgin subfamily a, 8A 
LOC653061             0.255   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.253   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.252   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.249   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.249   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.249   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA2                0.246   Golgi autoantigen, golgin subfamily a, 2 
LOC728498             0.244   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.244   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653720             0.244   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.242   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.238   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.238   PREDICTED: similar to golgi autoantigen, golgin sub...
GOLGA8E               0.227   golgi autoantigen, golgin subfamily a, 8E 
LOC653073             0.218   PREDICTED: Golgin subfamily A member 8-like protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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