Guide to the Human Genome
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Name: CCDC13 Sequence: fasta or formatted (715aa) NCBI GI: 154090997
Description:

coiled-coil domain containing 13

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         52           2
 C cysteine            0.0          0           0
 D aspartate           4.1         29           2
 E glutamate          11.6         83           2
 F phenylalanine       1.7         12           1
 G glycine             5.3         38           1
 H histidine           2.1         15           2
 I isoleucine          2.2         16           1
 K lysine              8.3         59           3
 L leucine            12.9         92           2
 M methionine          2.4         17           1
 N asparagine          2.9         21           2
 P proline             3.1         22           2
 Q glutamine           8.1         58           2
 R arginine            8.1         58           1
 S serine              8.5         61           2
 T threonine           4.6         33           2
 V valine              5.7         41           2
 W tryptophan          0.4          3           1
 Y tyrosine            0.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 13 
CCDC88A               0.046   coiled-coil domain containing 88A isoform 2 
MYH9                  0.045   myosin, heavy polypeptide 9, non-muscle 
CCDC88A               0.044   coiled-coil domain containing 88A isoform 1 
C10orf118             0.040   CTCL tumor antigen L14-2 
MYH14                 0.040   myosin, heavy chain 14 isoform 1 
MYH14                 0.040   myosin, heavy chain 14 isoform 2 
MYH14                 0.040   myosin, heavy chain 14 isoform 3 
CEP250                0.039   centrosomal protein 2 
MYH10                 0.039   myosin, heavy polypeptide 10, non-muscle 
NUMA1                 0.039   nuclear mitotic apparatus protein 1 
ERC1                  0.038   RAB6-interacting protein 2 isoform epsilon 
CGN                   0.037   cingulin 
CENPF                 0.037   centromere protein F 
ERC1                  0.037   RAB6-interacting protein 2 isoform delta 
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.037   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CLIP1                 0.036   restin isoform a 
TRIP11                0.036   thyroid hormone receptor interactor 11 
CLIP1                 0.035   restin isoform b 
CENPE                 0.035   centromere protein E 
MYH7                  0.034   myosin, heavy chain 7, cardiac muscle, beta 
CROCC                 0.034   ciliary rootlet coiled-coil 
MYO18A                0.033   myosin 18A isoform b 
DSP                   0.033   desmoplakin isoform I 
PPL                   0.033   periplakin 
MYH2                  0.033   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.033   myosin, heavy chain 2, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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