Guide to the Human Genome
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Name: AIRE Sequence: fasta or formatted (545aa) NCBI GI: 4557291
Description:

autoimmune regulator isoform 1

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [348aa] autoimmune regulator isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         64           3
 C cysteine            3.3         18           2
 D aspartate           5.0         27           2
 E glutamate           5.9         32           2
 F phenylalanine       2.6         14           1
 G glycine             8.8         48           3
 H histidine           2.8         15           1
 I isoleucine          2.0         11           1
 K lysine              4.4         24           2
 L leucine            10.3         56           2
 M methionine          0.9          5           1
 N asparagine          0.9          5           1
 P proline            11.7         64           3
 Q glutamine           4.8         26           2
 R arginine            6.6         36           2
 S serine              7.5         41           3
 T threonine           4.0         22           2
 V valine              5.1         28           2
 W tryptophan          0.9          5           1
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   autoimmune regulator isoform 1 
AIRE                  0.479   autoimmune regulator isoform 2 
CHD5                  0.056   chromodomain helicase DNA binding protein 5 
CHD4                  0.051   chromodomain helicase DNA binding protein 4 
SP140L                0.049   SP140 nuclear body protein-like 
CHD3                  0.049   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.049   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.049   chromodomain helicase DNA binding protein 3 isoform...
TRIM24                0.047   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.047   transcriptional intermediary factor 1 alpha isoform ...
SP110                 0.046   SP110 nuclear body protein isoform a 
SP110                 0.046   SP110 nuclear body protein isoform c 
TRIM66                0.046   tripartite motif-containing 66 
SP140                 0.045   SP140 nuclear body protein isoform 1 
TRIM33                0.042   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.042   tripartite motif-containing 33 protein isoform alpha...
PHF21A                0.040   BRAF35/HDAC2 complex isoform a 
SP100                 0.040   nuclear antigen Sp100 isoform 1 
PHF12                 0.039   PHD finger protein 12 isoform 1 
PHF12                 0.039   PHD finger protein 12 isoform 2 
PHF21A                0.037   BRAF35/HDAC2 complex isoform b 
PHF14                 0.036   PHD finger protein 14 isoform 1 
BPTF                  0.035   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.035   bromodomain PHD finger transcription factor isoform ...
BAZ1B                 0.033   bromodomain adjacent to zinc finger domain, 1B [Homo...
PHF21B                0.032   PHD finger protein 21B isoform 2 
PHF21B                0.032   PHD finger protein 21B isoform 1 
KDM5C                 0.030   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.030   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.030   jumonji, AT rich interactive domain 1D isoform 3 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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