Guide to the Human Genome
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Name: PHF12 Sequence: fasta or formatted (1004aa) NCBI GI: 75677357
Description:

PHD finger protein 12 isoform 1

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [704aa] PHD finger protein 12 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         66           3
 C cysteine            3.6         36           2
 D aspartate           4.6         46           1
 E glutamate           5.8         58           2
 F phenylalanine       2.0         20           1
 G glycine             5.9         59           2
 H histidine           3.5         35           2
 I isoleucine          3.9         39           2
 K lysine              5.4         54           2
 L leucine             9.0         90           2
 M methionine          1.9         19           2
 N asparagine          3.9         39           1
 P proline             9.1         91           3
 Q glutamine           5.2         52           2
 R arginine            5.4         54           4
 S serine              9.7         97           4
 T threonine           6.9         69           2
 V valine              5.7         57           2
 W tryptophan          0.7          7           1
 Y tyrosine            1.6         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 12 isoform 1 
PHF12                 0.694   PHD finger protein 12 isoform 2 
CHD5                  0.025   chromodomain helicase DNA binding protein 5 
CHD4                  0.024   chromodomain helicase DNA binding protein 4 
CHD3                  0.024   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.024   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.024   chromodomain helicase DNA binding protein 3 isoform...
AIRE                  0.021   autoimmune regulator isoform 1 
AIRE                  0.021   autoimmune regulator isoform 2 
PHF21B                0.018   PHD finger protein 21B isoform 2 
PHF21B                0.018   PHD finger protein 21B isoform 1 
NSD1                  0.017   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.017   nuclear receptor binding SET domain protein 1 isofor...
TRIM66                0.017   tripartite motif-containing 66 
TRIM24                0.017   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.017   transcriptional intermediary factor 1 alpha isoform ...
PHF21A                0.017   BRAF35/HDAC2 complex isoform b 
PHF21A                0.016   BRAF35/HDAC2 complex isoform a 
BPTF                  0.016   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.016   bromodomain PHD finger transcription factor isoform ...
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.016   MYST histone acetyltransferase (monocytic leukemia)...
TRIM33                0.016   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.016   tripartite motif-containing 33 protein isoform alpha...
WHSC1                 0.015   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.015   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.015   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.015   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
MYST4                 0.015   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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