Guide to the Human Genome
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Name: SP140L Sequence: fasta or formatted (580aa) NCBI GI: 134133279
Description:

SP140 nuclear body protein-like

Referenced in:

PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         21           1
 C cysteine            3.6         21           2
 D aspartate           5.3         31           1
 E glutamate           9.1         53           2
 F phenylalanine       4.5         26           2
 G glycine             6.4         37           3
 H histidine           2.2         13           1
 I isoleucine          3.6         21           1
 K lysine              9.5         55           3
 L leucine             8.1         47           3
 M methionine          2.6         15           1
 N asparagine          5.0         29           2
 P proline             4.5         26           2
 Q glutamine           5.3         31           2
 R arginine            7.2         42           2
 S serine              7.2         42           2
 T threonine           3.4         20           1
 V valine              5.0         29           2
 W tryptophan          1.0          6           1
 Y tyrosine            2.6         15           4
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SP140 nuclear body protein-like 
SP140                 0.654   SP140 nuclear body protein isoform 1 
SP100                 0.325   nuclear antigen Sp100 isoform 1 
SP110                 0.239   SP110 nuclear body protein isoform c 
SP100                 0.221   nuclear antigen Sp100 isoform 2 
SP110                 0.203   SP110 nuclear body protein isoform a 
SP110                 0.080   SP110 nuclear body protein isoform b 
SP140                 0.078   SP140 nuclear body protein isoform 2 
TRIM33                0.069   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.066   tripartite motif-containing 33 protein isoform alpha...
TRIM24                0.066   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.066   transcriptional intermediary factor 1 alpha isoform ...
TRIM66                0.055   tripartite motif-containing 66 
AIRE                  0.046   autoimmune regulator isoform 1 
AIRE                  0.033   autoimmune regulator isoform 2 
DEAF1                 0.032   deformed epidermal autoregulatory factor 1 
TRIM28                0.032   tripartite motif-containing 28 protein 
BPTF                  0.027   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.027   bromodomain PHD finger transcription factor isoform ...
PHF12                 0.026   PHD finger protein 12 isoform 1 
PHF12                 0.026   PHD finger protein 12 isoform 2 
PHF21A                0.024   BRAF35/HDAC2 complex isoform b 
PHF21A                0.024   BRAF35/HDAC2 complex isoform a 
CHD4                  0.022   chromodomain helicase DNA binding protein 4 
CHD5                  0.022   chromodomain helicase DNA binding protein 5 
CHD3                  0.020   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.020   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.020   chromodomain helicase DNA binding protein 3 isoform...
ZMYND8                0.019   zinc finger, MYND-type containing 8 isoform c 
NSD1                  0.017   nuclear receptor binding SET domain protein 1 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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