Guide to the Human Genome
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Name: CHD5 Sequence: fasta or formatted (1954aa) NCBI GI: 24308089
Description:

chromodomain helicase DNA binding protein 5

Referenced in:

Nonhistone Chromosomal Proteins
PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        109           7
 C cysteine            1.4         28           2
 D aspartate           7.1        138           4
 E glutamate           9.8        192           4
 F phenylalanine       3.4         67           2
 G glycine             6.8        132           3
 H histidine           2.4         47           2
 I isoleucine          4.0         79           2
 K lysine              9.4        183           6
 L leucine             9.2        180           3
 M methionine          2.6         50           2
 N asparagine          3.9         77           2
 P proline             6.3        123           3
 Q glutamine           3.9         77           3
 R arginine            5.6        109           3
 S serine              6.2        122           3
 T threonine           3.2         62           1
 V valine              4.7         91           2
 W tryptophan          1.5         29           1
 Y tyrosine            3.0         59           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromodomain helicase DNA binding protein 5 
CHD4                  0.676   chromodomain helicase DNA binding protein 4 
CHD3                  0.673   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.672   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.672   chromodomain helicase DNA binding protein 3 isoform...
CHD2                  0.136   chromodomain helicase DNA binding protein 2 isoform...
CHD1                  0.130   chromodomain helicase DNA binding protein 1 
CHD9                  0.121   chromodomain helicase DNA binding protein 9 
CHD7                  0.120   chromodomain helicase DNA binding protein 7 
CHD8                  0.118   chromodomain helicase DNA binding protein 8 
CHD6                  0.118   chromodomain helicase DNA binding protein 6 
SMARCA1               0.103   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.101   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.100   SWI/SNF-related matrix-associated actin-dependent re...
CHD1L                 0.097   chromodomain helicase DNA binding protein 1-like [H...
SMARCA4               0.093   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.093   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.092   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA2               0.091   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.091   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.090   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.090   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.089   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.089   SWI/SNF-related matrix-associated actin-dependent r...
HELLS                 0.066   helicase, lymphoid-specific 
SMARCAD1              0.064   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.064   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.064   SWI/SNF-related, matrix-associated actin-dependent ...
ERCC6                 0.059   excision repair cross-complementing rodent repair def...
RAD54L                0.049   RAD54-like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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