Guide to the Human Genome
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Name: CHD3 Sequence: fasta or formatted (2000aa) NCBI GI: 52630326
Description:

chromodomain helicase DNA binding protein 3 isoform 1

Referenced in:

Nonhistone Chromosomal Proteins
PHD Finger Proteins
Small RNAs in RNA Processing

Other entries for this name:
alt prot [2059aa] chromodomain helicase DNA binding protein 3 isoform 3
alt prot [1966aa] chromodomain helicase DNA binding protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4        148          10
 C cysteine            1.4         27           2
 D aspartate           5.5        110           2
 E glutamate          10.2        203           5
 F phenylalanine       3.1         62           2
 G glycine             7.4        148           3
 H histidine           2.5         49           2
 I isoleucine          4.0         79           2
 K lysine              8.5        170           5
 L leucine             8.3        167           3
 M methionine          2.4         48           2
 N asparagine          3.6         72           2
 P proline             6.9        138           4
 Q glutamine           3.9         77           3
 R arginine            6.9        138           3
 S serine              5.6        112           2
 T threonine           3.9         77           2
 V valine              4.4         88           2
 W tryptophan          1.5         30           1
 Y tyrosine            2.9         57           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromodomain helicase DNA binding protein 3 isoform ... 
CHD3                  0.983   chromodomain helicase DNA binding protein 3 isoform...
CHD3                  0.978   chromodomain helicase DNA binding protein 3 isoform ...
CHD5                  0.657   chromodomain helicase DNA binding protein 5 
CHD4                  0.639   chromodomain helicase DNA binding protein 4 
CHD2                  0.137   chromodomain helicase DNA binding protein 2 isoform...
CHD1                  0.133   chromodomain helicase DNA binding protein 1 
CHD7                  0.123   chromodomain helicase DNA binding protein 7 
CHD8                  0.120   chromodomain helicase DNA binding protein 8 
CHD6                  0.120   chromodomain helicase DNA binding protein 6 
CHD9                  0.118   chromodomain helicase DNA binding protein 9 
SMARCA1               0.103   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.101   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.098   SWI/SNF-related matrix-associated actin-dependent re...
CHD1L                 0.095   chromodomain helicase DNA binding protein 1-like [H...
SMARCA4               0.094   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.093   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.093   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA2               0.093   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.092   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA2               0.092   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.090   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.090   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.089   SWI/SNF-related matrix-associated actin-dependent r...
HELLS                 0.065   helicase, lymphoid-specific 
SMARCAD1              0.060   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.060   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.060   SWI/SNF-related, matrix-associated actin-dependent ...
ERCC6                 0.058   excision repair cross-complementing rodent repair def...
C9orf102              0.048   RAD26L hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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