Guide to the Human Genome
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Name: BAZ1B Sequence: fasta or formatted (1483aa) NCBI GI: 14670392
Description:

bromodomain adjacent to zinc finger domain, 1B

Referenced in:

PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         90           3
 C cysteine            1.9         28           1
 D aspartate           5.3         78           2
 E glutamate          11.7        174          13
 F phenylalanine       2.6         38           2
 G glycine             4.3         64           2
 H histidine           2.8         41           2
 I isoleucine          3.2         47           2
 K lysine             11.3        168           3
 L leucine             9.7        144           3
 M methionine          2.3         34           2
 N asparagine          3.2         47           1
 P proline             5.1         75           2
 Q glutamine           3.8         56           2
 R arginine            7.0        104           2
 S serine              7.1        105           2
 T threonine           4.5         67           3
 V valine              5.0         74           2
 W tryptophan          1.1         16           1
 Y tyrosine            2.2         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bromodomain adjacent to zinc finger domain, 1B [Homo... 
BAZ1A                 0.075   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.071   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ2B                 0.040   bromodomain adjacent to zinc finger domain, 2B [Homo...
BAZ2A                 0.031   bromodomain adjacent to zinc finger domain, 2A [Homo...
CECR2                 0.019   cat eye syndrome chromosome region, candidate 2 [Ho...
CHD3                  0.017   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.017   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.017   chromodomain helicase DNA binding protein 3 isoform...
KDM5C                 0.016   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.016   jumonji, AT rich interactive domain 1C isoform 1 [H...
BRD2                  0.016   bromodomain containing 2 
BRD2                  0.016   bromodomain containing 2 
CHD5                  0.016   chromodomain helicase DNA binding protein 5 
BRD3                  0.015   bromodomain containing protein 3 
BRD4                  0.014   bromodomain-containing protein 4 isoform short 
BRD4                  0.014   bromodomain-containing protein 4 isoform long 
KAT2B                 0.014   K(lysine) acetyltransferase 2B 
KDM5B                 0.014   jumonji, AT rich interactive domain 1B 
LOC100133760          0.014   PREDICTED: similar to Jumonji, AT rich interactive ...
PHIP                  0.014   pleckstrin homology domain interacting protein [Homo...
BPTF                  0.014   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.014   bromodomain PHD finger transcription factor isoform ...
KDM5A                 0.014   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.014   retinoblastoma binding protein 2 isoform 2 
KDM5D                 0.014   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.014   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.014   jumonji, AT rich interactive domain 1D isoform 1 [H...
CHD4                  0.014   chromodomain helicase DNA binding protein 4 
MLL2                  0.014   myeloid/lymphoid or mixed-lineage leukemia 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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