Guide to the Human Genome
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Name: SP140 Sequence: fasta or formatted (867aa) NCBI GI: 217330601
Description:

SP140 nuclear body protein isoform 1

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [172aa] SP140 nuclear body protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         43           2
 C cysteine            4.3         37           2
 D aspartate           4.8         42           2
 E glutamate          11.8        102           3
 F phenylalanine       3.9         34           2
 G glycine             7.3         63           3
 H histidine           1.5         13           1
 I isoleucine          3.0         26           1
 K lysine              6.5         56           3
 L leucine             7.4         64           3
 M methionine          2.9         25           1
 N asparagine          4.8         42           2
 P proline             5.7         49           2
 Q glutamine           5.4         47           2
 R arginine            6.8         59           2
 S serine              8.3         72           3
 T threonine           3.0         26           1
 V valine              4.5         39           2
 W tryptophan          0.9          8           1
 Y tyrosine            2.3         20           4
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SP140 nuclear body protein isoform 1 
SP140L                0.434   SP140 nuclear body protein-like 
SP100                 0.306   nuclear antigen Sp100 isoform 1 
SP100                 0.181   nuclear antigen Sp100 isoform 2 
SP110                 0.166   SP110 nuclear body protein isoform c 
SP110                 0.141   SP110 nuclear body protein isoform a 
SP140                 0.141   SP140 nuclear body protein isoform 2 
SP110                 0.060   SP110 nuclear body protein isoform b 
TRIM33                0.044   tripartite motif-containing 33 protein isoform beta ...
TRIM24                0.043   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.043   transcriptional intermediary factor 1 alpha isoform ...
TRIM33                0.042   tripartite motif-containing 33 protein isoform alpha...
TRIM66                0.036   tripartite motif-containing 66 
AIRE                  0.028   autoimmune regulator isoform 1 
RPGR                  0.023   retinitis pigmentosa GTPase regulator isoform C [Hom...
DEAF1                 0.023   deformed epidermal autoregulatory factor 1 
AIRE                  0.022   autoimmune regulator isoform 2 
TRIM28                0.021   tripartite motif-containing 28 protein 
BPTF                  0.018   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.018   bromodomain PHD finger transcription factor isoform ...
PHF12                 0.016   PHD finger protein 12 isoform 1 
PHF12                 0.016   PHD finger protein 12 isoform 2 
CHD5                  0.016   chromodomain helicase DNA binding protein 5 
CHD4                  0.015   chromodomain helicase DNA binding protein 4 
PHF21A                0.015   BRAF35/HDAC2 complex isoform b 
PHF21A                0.015   BRAF35/HDAC2 complex isoform a 
CHD3                  0.015   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.015   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.015   chromodomain helicase DNA binding protein 3 isoform...
ZMYND8                0.014   zinc finger, MYND-type containing 8 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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