SP140 13674

Name: SP140	Sequence: fasta or formatted (867aa)		NCBI GI: 217330601
Description: SP140 nuclear body protein isoform 1		Referenced in: PHD Finger Proteins
Other entries for this name: alt prot [172aa] SP140 nuclear body protein isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 43 2 C cysteine 4.3 37 2 D aspartate 4.8 42 2 E glutamate 11.8 102 3 F phenylalanine 3.9 34 2 G glycine 7.3 63 3 H histidine 1.5 13 1 I isoleucine 3.0 26 1 K lysine 6.5 56 3 L leucine 7.4 64 3 M methionine 2.9 25 1 N asparagine 4.8 42 2 P proline 5.7 49 2 Q glutamine 5.4 47 2 R arginine 6.8 59 2 S serine 8.3 72 3 T threonine 3.0 26 1 V valine 4.5 39 2 W tryptophan 0.9 8 1 Y tyrosine 2.3 20 4			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SP140 nuclear body protein isoform 1 SP140L 0.434 SP140 nuclear body protein-like SP100 0.306 nuclear antigen Sp100 isoform 1 SP100 0.181 nuclear antigen Sp100 isoform 2 SP110 0.166 SP110 nuclear body protein isoform c SP110 0.141 SP110 nuclear body protein isoform a SP140 0.141 SP140 nuclear body protein isoform 2 SP110 0.060 SP110 nuclear body protein isoform b TRIM33 0.044 tripartite motif-containing 33 protein isoform beta ... TRIM24 0.043 transcriptional intermediary factor 1 alpha isoform ... TRIM24 0.043 transcriptional intermediary factor 1 alpha isoform ... TRIM33 0.042 tripartite motif-containing 33 protein isoform alpha... TRIM66 0.036 tripartite motif-containing 66 AIRE 0.028 autoimmune regulator isoform 1 RPGR 0.023 retinitis pigmentosa GTPase regulator isoform C [Hom... DEAF1 0.023 deformed epidermal autoregulatory factor 1 AIRE 0.022 autoimmune regulator isoform 2 TRIM28 0.021 tripartite motif-containing 28 protein BPTF 0.018 bromodomain PHD finger transcription factor isoform ... BPTF 0.018 bromodomain PHD finger transcription factor isoform ... PHF12 0.016 PHD finger protein 12 isoform 1 PHF12 0.016 PHD finger protein 12 isoform 2 CHD5 0.016 chromodomain helicase DNA binding protein 5 CHD4 0.015 chromodomain helicase DNA binding protein 4 PHF21A 0.015 BRAF35/HDAC2 complex isoform b PHF21A 0.015 BRAF35/HDAC2 complex isoform a CHD3 0.015 chromodomain helicase DNA binding protein 3 isoform ... CHD3 0.015 chromodomain helicase DNA binding protein 3 isoform ... CHD3 0.015 chromodomain helicase DNA binding protein 3 isoform... ZMYND8 0.014 zinc finger, MYND-type containing 8 isoform c Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.