Guide to the Human Genome
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Name: PHF12 Sequence: fasta or formatted (704aa) NCBI GI: 30842829
Description:

PHD finger protein 12 isoform 2

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [1004aa] PHD finger protein 12 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         46           3
 C cysteine            4.3         30           2
 D aspartate           4.8         34           1
 E glutamate           6.1         43           2
 F phenylalanine       1.4         10           1
 G glycine             4.8         34           2
 H histidine           3.3         23           1
 I isoleucine          3.7         26           2
 K lysine              5.5         39           2
 L leucine             8.8         62           2
 M methionine          1.7         12           1
 N asparagine          3.8         27           1
 P proline            10.4         73           3
 Q glutamine           5.1         36           2
 R arginine            5.8         41           3
 S serine              9.5         67           2
 T threonine           7.5         53           2
 V valine              5.1         36           2
 W tryptophan          0.9          6           1
 Y tyrosine            0.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 12 isoform 2 
PHF12                 0.987   PHD finger protein 12 isoform 1 
CHD5                  0.036   chromodomain helicase DNA binding protein 5 
CHD4                  0.034   chromodomain helicase DNA binding protein 4 
CHD3                  0.034   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.034   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.034   chromodomain helicase DNA binding protein 3 isoform...
AIRE                  0.030   autoimmune regulator isoform 1 
AIRE                  0.030   autoimmune regulator isoform 2 
PHF21B                0.025   PHD finger protein 21B isoform 2 
PHF21B                0.025   PHD finger protein 21B isoform 1 
NSD1                  0.024   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.024   nuclear receptor binding SET domain protein 1 isofor...
TRIM66                0.024   tripartite motif-containing 66 
TRIM24                0.024   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.024   transcriptional intermediary factor 1 alpha isoform ...
PHF21A                0.024   BRAF35/HDAC2 complex isoform b 
PHF21A                0.023   BRAF35/HDAC2 complex isoform a 
BPTF                  0.023   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.023   bromodomain PHD finger transcription factor isoform ...
MYST3                 0.023   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.023   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.023   MYST histone acetyltransferase (monocytic leukemia)...
TRIM33                0.023   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.023   tripartite motif-containing 33 protein isoform alpha...
WHSC1                 0.021   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.021   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.021   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.021   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
MYST4                 0.021   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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