Guide to the Human Genome
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Name: TRIM33 Sequence: fasta or formatted (1127aa) NCBI GI: 74027249
Description:

tripartite motif-containing 33 protein isoform alpha

Referenced in:

PHD Finger Proteins
Tripartite Motif Family

Other entries for this name:
alt prot [1110aa] tripartite motif-containing 33 protein isoform beta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         87           3
 C cysteine            3.4         38           2
 D aspartate           4.3         49           3
 E glutamate           7.0         79           6
 F phenylalanine       2.6         29           1
 G glycine             6.8         77           4
 H histidine           2.8         32           1
 I isoleucine          4.0         45           2
 K lysine              5.7         64           3
 L leucine             7.8         88           3
 M methionine          1.8         20           2
 N asparagine          4.3         49           2
 P proline             8.2         92           3
 Q glutamine           7.0         79           3
 R arginine            4.5         51           2
 S serine              8.8         99           3
 T threonine           5.2         59           6
 V valine              6.0         68           3
 W tryptophan          0.4          5           1
 Y tyrosine            1.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 33 protein isoform alpha... 
TRIM33                0.981   tripartite motif-containing 33 protein isoform beta ...
TRIM24                0.409   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.398   transcriptional intermediary factor 1 alpha isoform ...
TRIM28                0.139   tripartite motif-containing 28 protein 
TRIM66                0.092   tripartite motif-containing 66 
TRIM45                0.051   tripartite motif-containing 45 isoform 2 
TRIM45                0.051   tripartite motif-containing 45 isoform 1 
TRIM71                0.035   tripartite motif-containing 71 
SP140L                0.034   SP140 nuclear body protein-like 
SP140                 0.033   SP140 nuclear body protein isoform 1 
TRIM56                0.032   tripartite motif-containing 56 
SP100                 0.030   nuclear antigen Sp100 isoform 1 
BAZ2A                 0.030   bromodomain adjacent to zinc finger domain, 2A [Homo...
SP110                 0.030   SP110 nuclear body protein isoform c 
TRIM3                 0.029   tripartite motif-containing 3 
TRIM3                 0.029   tripartite motif-containing 3 
BAZ2B                 0.028   bromodomain adjacent to zinc finger domain, 2B [Homo...
TRIM2                 0.027   tripartite motif-containing 2 isoform 1 
TRIM2                 0.027   tripartite motif-containing 2 isoform 2 
MID1                  0.026   midline 1 
MID1                  0.026   midline 1 
MID1                  0.026   midline 1 
PML                   0.026   promyelocytic leukemia protein isoform 11 
PML                   0.026   promyelocytic leukemia protein isoform 2 
PML                   0.026   promyelocytic leukemia protein isoform 9 
PML                   0.026   promyelocytic leukemia protein isoform 8 
PML                   0.026   promyelocytic leukemia protein isoform 6 
PML                   0.026   promyelocytic leukemia protein isoform 7 
PML                   0.026   promyelocytic leukemia protein isoform 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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