Guide to the Human Genome
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Name: SP110 Sequence: fasta or formatted (713aa) NCBI GI: 190343006
Description:

SP110 nuclear body protein isoform c

Referenced in:

Interferon
PHD Finger Proteins

Other entries for this name:
alt prot [549aa] SP110 nuclear body protein isoform b
alt prot [689aa] SP110 nuclear body protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         30           2
 C cysteine            3.4         24           2
 D aspartate           4.8         34           2
 E glutamate           7.9         56           2
 F phenylalanine       3.6         26           2
 G glycine             5.2         37           2
 H histidine           2.7         19           2
 I isoleucine          3.9         28           2
 K lysine              8.7         62           3
 L leucine             7.7         55           3
 M methionine          3.1         22           2
 N asparagine          3.4         24           1
 P proline             6.9         49           3
 Q glutamine           5.0         36           2
 R arginine            7.2         51           2
 S serine              9.1         65           3
 T threonine           6.0         43           1
 V valine              4.8         34           2
 W tryptophan          1.1          8           1
 Y tyrosine            1.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SP110 nuclear body protein isoform c 
SP110                 0.954   SP110 nuclear body protein isoform a 
SP110                 0.726   SP110 nuclear body protein isoform b 
SP100                 0.231   nuclear antigen Sp100 isoform 1 
SP140                 0.203   SP140 nuclear body protein isoform 1 
SP140L                0.195   SP140 nuclear body protein-like 
SP100                 0.122   nuclear antigen Sp100 isoform 2 
TRIM24                0.055   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.055   transcriptional intermediary factor 1 alpha isoform ...
TRIM33                0.051   tripartite motif-containing 33 protein isoform beta ...
SP140                 0.050   SP140 nuclear body protein isoform 2 
TRIM33                0.047   tripartite motif-containing 33 protein isoform alpha...
TRIM66                0.040   tripartite motif-containing 66 
AIRE                  0.035   autoimmune regulator isoform 1 
TRIM28                0.028   tripartite motif-containing 28 protein 
PPIG                  0.025   peptidylprolyl isomerase G 
AIRE                  0.023   autoimmune regulator isoform 2 
DEAF1                 0.022   deformed epidermal autoregulatory factor 1 
CHD5                  0.021   chromodomain helicase DNA binding protein 5 
CHD4                  0.020   chromodomain helicase DNA binding protein 4 
CHD3                  0.019   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.019   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.019   chromodomain helicase DNA binding protein 3 isoform...
PHF12                 0.019   PHD finger protein 12 isoform 1 
PHF12                 0.019   PHD finger protein 12 isoform 2 
SFRS11                0.017   splicing factor, arginine/serine-rich 11 
PHF21A                0.017   BRAF35/HDAC2 complex isoform b 
PHF21A                0.017   BRAF35/HDAC2 complex isoform a 
BPTF                  0.017   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.017   bromodomain PHD finger transcription factor isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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