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Search of human proteins with 45359846
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
(449 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 925 0.0
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 908 0.0
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 908 0.0
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 514 e-146
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 514 e-146
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 68 2e-11
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 68 2e-11
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 66 7e-11
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 65 1e-10
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 65 2e-10
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 64 3e-10
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 64 3e-10
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 62 1e-09
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 62 1e-09
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 59 7e-09
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 58 2e-08
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 58 2e-08
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 58 2e-08
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 58 2e-08
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 58 2e-08
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 56 6e-08
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 56 6e-08
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 55 1e-07
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 55 2e-07
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 55 2e-07
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 54 2e-07
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 53 6e-07
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 52 1e-06
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 52 1e-06
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 52 1e-06
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 925 bits (2390), Expect = 0.0
Identities = 449/449 (100%), Positives = 449/449 (100%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
Query: 241 PKPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQL 300
PKPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQL
Sbjct: 241 PKPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQL 300
Query: 301 FVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKP 360
FVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKP
Sbjct: 301 FVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKP 360
Query: 361 IMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRG 420
IMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRG
Sbjct: 361 IMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRG 420
Query: 421 PPPRGGMAQKLGSGRGTGQMEGRFTGQRR 449
PPPRGGMAQKLGSGRGTGQMEGRFTGQRR
Sbjct: 421 PPPRGGMAQKLGSGRGTGQMEGRFTGQRR 449
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 908 bits (2346), Expect = 0.0
Identities = 449/482 (93%), Positives = 449/482 (93%), Gaps = 33/482 (6%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
Query: 241 PK---------------------------------PRVEAKPEVQSQPPRVREQRPRERP 267
PK PRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
Query: 268 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 327
GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
Query: 328 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 387
RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
Query: 388 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 447
GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
Query: 448 RR 449
RR
Sbjct: 481 RR 482
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 908 bits (2346), Expect = 0.0
Identities = 449/482 (93%), Positives = 449/482 (93%), Gaps = 33/482 (6%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
Query: 241 PK---------------------------------PRVEAKPEVQSQPPRVREQRPRERP 267
PK PRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
Query: 268 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 327
GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
Query: 328 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 387
RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
Query: 388 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 447
GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
Query: 448 RR 449
RR
Sbjct: 481 RR 482
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 514 bits (1323), Expect = e-146
Identities = 291/482 (60%), Positives = 341/482 (70%), Gaps = 65/482 (13%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
NKFYVHND+FRY+DEVFG E EESE+EV EE EERQ +PE V +++ + +Y+
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
V+N +EE LEE EPEP+PE E + E + EEK LEE KS++P PA+
Sbjct: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238
Query: 234 VSLPQE---------------PP-------------------KPRVEAKPEVQSQPPR-V 258
QE PP +PR E+KPE Q P R
Sbjct: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298
Query: 259 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 316
R+QR RE R PP RGPRP R EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358
Query: 317 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 376
FF S+GNVVELRIN+ GGKLPNFGFVVFDDSEPVQ++L +PIMFRGEVRLNVEEKKT
Sbjct: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
Query: 377 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 436
RAARE DRRD R RGPGGPRG +GGGM RG PPRGGM QK G G G
Sbjct: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459
Query: 437 TG 438
G
Sbjct: 460 RG 461
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 514 bits (1323), Expect = e-146
Identities = 291/482 (60%), Positives = 341/482 (70%), Gaps = 65/482 (13%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
NKFYVHND+FRY+DEVFG E EESE+EV EE EERQ +PE V +++ + +Y+
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
V+N +EE LEE EPEP+PE E + E + EEK LEE KS++P PA+
Sbjct: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238
Query: 234 VSLPQE---------------PP-------------------KPRVEAKPEVQSQPPR-V 258
QE PP +PR E+KPE Q P R
Sbjct: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298
Query: 259 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 316
R+QR RE R PP RGPRP R EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358
Query: 317 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 376
FF S+GNVVELRIN+ GGKLPNFGFVVFDDSEPVQ++L +PIMFRGEVRLNVEEKKT
Sbjct: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
Query: 377 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 436
RAARE DRRD R RGPGGPRG +GGGM RG PPRGGM QK G G G
Sbjct: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459
Query: 437 TG 438
G
Sbjct: 460 RG 461
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 67.8 bits (164), Expect = 2e-11
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 31/176 (17%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LFVG + D +E+ L+++F +G + + I T GK FGFV FDD +PV +I++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 359 KPIMFRGEVRLNVEEKKTRAARE-------RETRGG----GDDR-----------RDIRR 396
K G N E +K + +E R RGG GD R + R
Sbjct: 173 KYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRG 229
Query: 397 NDRGPGGPRGI------VGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTG 446
G G RG GGG G P GG G G G G G + G
Sbjct: 230 GSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LF+G L + E L+ ++ +G + + + + FGFV F V + A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGG 387
+P G V E K ARE + G
Sbjct: 82 RPHSIDG----RVVEPKRAVAREESGKPG 106
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 67.8 bits (164), Expect = 2e-11
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 31/176 (17%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LFVG + D +E+ L+++F +G + + I T GK FGFV FDD +PV +I++
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 359 KPIMFRGEVRLNVEEKKTRAARE-------RETRGG----GDDR-----------RDIRR 396
K G N E +K + +E R RGG GD R + R
Sbjct: 161 KYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRG 217
Query: 397 NDRGPGGPRGI------VGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTG 446
G G RG GGG G P GG G G G G G + G
Sbjct: 218 GSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 273
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LF+G L + E L+ ++ +G + + + + FGFV F V + A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGG 387
+P G V E K ARE + G
Sbjct: 70 RPHSIDG----RVVEPKRAVAREESGKPG 94
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 65.9 bits (159), Expect = 7e-11
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 20/157 (12%)
Query: 142 EPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPE 201
E E +EE E+E EEE+EE + E +E+ + E EE EE E E E E
Sbjct: 888 EEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEE 947
Query: 202 SETKTEELKPQVEEKNLEELE--------EKSTTPPPAEPVSL--PQEPPKPRVEAKPE- 250
E + EE E + +E+LE E+ PPP P +L P+ PPK + E +PE
Sbjct: 948 EEDEEEE----EELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPESPPKVQPEPEPEP 1003
Query: 251 ---VQSQPPRVREQRPRE-RPGFPPRGPRPGRGDMEQ 283
++ + P E+R + P P P +G++E+
Sbjct: 1004 GLLLEVEEPGTEEERGADTAPTLAPEA-LPSQGEVER 1039
Score = 48.5 bits (114), Expect = 1e-05
Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 129 DMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEA---------H 179
+ F E+E + E E +EE + EEE+EE + E ++E + + A
Sbjct: 919 EYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPP 978
Query: 180 PVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQE 239
P T P ES + +PEPE E L +VEE EE E + T P P +LP +
Sbjct: 979 PPTLPPALPPPESPPKVQPEPEPE---PGLLLEVEEPGTEE-ERGADTAPTLAPEALPSQ 1034
Query: 240 PPKPRVEAKPEVQSQPPRVREQRPRERP 267
R P P + E+ P P
Sbjct: 1035 GEVEREGESPAAGPPPQELVEEEPSAPP 1062
Score = 46.2 bits (108), Expect = 6e-05
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 134 EDEVFGDSEPELDEE---SEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLE 190
E+E D+ P L E S+ EVE E E P P QE E +EE E
Sbjct: 1015 EEERGADTAPTLAPEALPSQGEVEREGESPAAGPPP-QELVEE---EPSAPPTLLEEETE 1070
Query: 191 ESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPE 250
+ S + +P PE+ + EE++ + E + L+E E+ T A+ + P + KP +P+
Sbjct: 1071 DGSDKVQPPPETPAE-EEMETETEAEALQEKEQDDTAAMLADFIDCPPDDEKPPPPTEPD 1129
Score = 36.6 bits (83), Expect = 0.048
Identities = 41/146 (28%), Positives = 47/146 (32%), Gaps = 37/146 (25%)
Query: 118 GSVPNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYE 177
G VP +VH Y+ E D E L+ +S+D V E P P P A
Sbjct: 758 GRVPRPAFVH-----YDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGAT----- 807
Query: 178 AHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLP 237
P P + T P V K EE EE PA P LP
Sbjct: 808 --------------------PPPIAPTGPPTASPPVPAK--EEPEEL-----PAAPGPLP 840
Query: 238 QEPPKPRVEAKPEVQSQPPRVREQRP 263
PP P P P V E P
Sbjct: 841 PPPPPPPPVPGPVTLPPPQLVPEGTP 866
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 65.1 bits (157), Expect = 1e-10
Identities = 63/208 (30%), Positives = 93/208 (44%), Gaps = 28/208 (13%)
Query: 74 HTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRY 133
H +R+ + A +G V Q L +G A E VH+D +
Sbjct: 295 HQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDV--EIEEAGEEEEKEIAIVHSDAEKE 352
Query: 134 EDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPV-------TNGIE 186
++E E E+ E E EV E ++++ PE V + H + TN +E
Sbjct: 353 QEEEEQKQEMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKHVIADQEVMETNRVE 412
Query: 187 --EPLE-ESSHEPEPEPESETKTEE----LKPQVE-------EKNLEELEEKSTTPPPAE 232
EP E E+S E EPE E E + ++ L P E EK EE EEK + P P E
Sbjct: 413 SVEPSENEASKELEPEMEFEIEPDKECKSLSPGKENVSALDMEKESEEKEEKESEPQP-E 471
Query: 233 PVSLPQEPPKPRV----EAKPEVQSQPP 256
PV+ PQ +P++ +++P +QSQPP
Sbjct: 472 PVAQPQPQSQPQLQLQSQSQPVLQSQPP 499
Score = 41.2 bits (95), Expect = 0.002
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 145 LDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESET 204
LD E E E E+E++E +P PEPV + + + +P+ +S +PE S
Sbjct: 452 LDMEKESE-EKEEKESEPQPEPVAQPQPQSQPQLQLQSQS--QPVLQSQPPSQPEDLSLA 508
Query: 205 KTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPEVQSQPPRVREQRPR 264
+ PQV ++ L E+ P E V L + P +P + PE +S+ R R
Sbjct: 509 VLQPT-PQVTQEQGHLLPERKDFP--VESVKLTEVPVEPVLTVHPESKSKTKTRSRSRGR 565
Query: 265 ER 266
R
Sbjct: 566 AR 567
Score = 33.1 bits (74), Expect = 0.53
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 140 DSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPE 199
++ EL+ E E E+E ++E + SP +EN ++ +E+ S E E E
Sbjct: 420 EASKELEPEMEFEIEPDKECKSLSPG--KENVSA-------------LDMEKESEEKE-E 463
Query: 200 PESETKTEEL-KPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPEVQSQPPRV 258
ESE + E + +PQ + + +L+ +S ++P S P++ ++ P+V + +
Sbjct: 464 KESEPQPEPVAQPQPQSQPQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQEQGHL 523
Query: 259 REQR 262
+R
Sbjct: 524 LPER 527
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 64.7 bits (156), Expect = 2e-10
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++FVG + D +E L+++F +G + + + GK F FV FDD + V +I++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRD- 417
K G N E KK + +E ++ G R N G GG G GG R +
Sbjct: 187 KYHTINGH---NCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNF 243
Query: 418 -GRGPPPRGGMAQKLGSGRGTGQMEG 442
GRG GG + G G G G
Sbjct: 244 GGRGGYGGGGGGSRGSYGGGDGGYNG 269
Score = 42.4 bits (98), Expect = 9e-04
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 270 PPRGPRPGRGDMEQNDSDNRRIIRYPDS-HQLFVGNLPHDIDENELKEFFMSFGNVVELR 328
PP P+P G + + + P+ +LF+G L + ++ L+E F +G + +
Sbjct: 6 PPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV 65
Query: 329 INTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 387
+ + FGFV + E V + A+P G V E K +RE + G
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDG----RVVEPKRAVSREDSVKPG 120
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 63.9 bits (154), Expect = 3e-10
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 281 MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGG 336
+E + +R + P +H ++FVG + D +E+ L+++F +G + + I T G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 337 KLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRR 396
K F FV FDD + V +I+I K +G N E +K A ++E +R RR
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGH---NCEVRK--ALPKQEMASASSSQRG-RR 197
Query: 397 NDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQMEG 442
GG RG GG D GRG RGG G G G +G
Sbjct: 198 GSGNFGGGRGDGFGG--NDNFGRGGNFSGRGGFGGSCGGGGYGGSGDG 243
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 63.9 bits (154), Expect = 3e-10
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 281 MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGG 336
+E + +R + P +H ++FVG + D +E+ L+++F +G + + I T G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 337 KLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRR 396
K F FV FDD + V +I+I K +G N E +K A ++E +R RR
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGH---NCEVRK--ALPKQEMASASSSQRG-RR 197
Query: 397 NDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQMEG 442
GG RG GG D GRG RGG G G G +G
Sbjct: 198 GSGNFGGGRGDGFGG--NDNFGRGGNFSGRGGFGGSCGGGGYGGSGDG 243
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 61.6 bits (148), Expect = 1e-09
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 275 RPGRGD---MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVEL 327
RP + D +E + +R + P +H ++FVG + D +E+ L+++F +G + +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 328 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRG---EVR--LNVEEKKTRAARER 382
I T GK F FV FDD + V +I+I K G EVR L+ +E + ++ +R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 383 ETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQM 440
G G+ GG RG GG D GRG RGG G G G
Sbjct: 195 GRSGSGNF-----------GGGRG--GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241
Query: 441 EG 442
+G
Sbjct: 242 DG 243
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 61.6 bits (148), Expect = 1e-09
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 275 RPGRGD---MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVEL 327
RP + D +E + +R + P +H ++FVG + D +E+ L+++F +G + +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 328 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRG---EVR--LNVEEKKTRAARER 382
I T GK F FV FDD + V +I+I K G EVR L+ +E + ++ +R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 383 ETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQM 440
G G+ GG RG GG D GRG RGG G G G
Sbjct: 195 GRSGSGNF-----------GGGRG--GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241
Query: 441 EG 442
+G
Sbjct: 242 DG 243
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 59.3 bits (142), Expect = 7e-09
Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LFVG L D+ E +L E F FG V + I GK FGFV F + + + +
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDG 418
K +G VE KK + + GGG R+ RG G RG GG RD++G
Sbjct: 159 KFHPIQGH---RVEVKKAVPKEDIYSGGGGGG----SRSSRGGRGGRGRGGG---RDQNG 208
Query: 419 RGPPPRGGMAQKLGSGRGTG 438
GG G G G G
Sbjct: 209 LSKGGGGGYNSYGGYGGGGG 228
Score = 34.7 bits (78), Expect = 0.18
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LF+G L E+ L+ F +FG + + + + FGFV + + E + A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGG 387
P G N E K +RE R G
Sbjct: 68 SPHAVDG----NTVELKRAVSREDSARPG 92
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 58.2 bits (139), Expect = 2e-08
Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 140 DSEPELDEESED-EVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEP 198
D+E E ESE E +E +EE QP E V+ G EA P + GIE P E +PE
Sbjct: 2152 DAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEG--EAQPESEGIEAPEAEGEAQPEL 2209
Query: 199 EPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRV---EAKPEVQSQ- 254
E + EE + Q E + +E E + P +E + ++ P+V + + E S+
Sbjct: 2210 EGVEAPEAEE-EAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASES 2268
Query: 255 -----------PPRVREQRPRERPGFPPRGPRPGR----GDMEQNDSDNRRII---RYPD 296
PP P +RPG GP R G+ Q DS+N ++ R PD
Sbjct: 2269 SSPVPEDRPTPPPSPGGDTPHQRPG-SQTGPSSSRASSWGNCWQKDSENDHVLGDTRSPD 2327
Query: 297 S 297
+
Sbjct: 2328 A 2328
Score = 50.1 bits (118), Expect = 4e-06
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 136 EVFGDSEPELD----EESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEE 191
E G+++PE + E+E + +E + E QP E V+ G EA P + +E P E
Sbjct: 1839 EAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEG--EAQPESEDVETP--E 1894
Query: 192 SSHEPEPEPE-SETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPE 250
+ E +PE E +E E + Q E +++E LE + P +E QE + EA+ +
Sbjct: 1895 AEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAE-AQEAEEAAQEAEGQ 1953
Query: 251 VQSQPPRVREQRPRE 265
Q + + Q E
Sbjct: 1954 TQPESEVIESQEAEE 1968
Score = 48.9 bits (115), Expect = 9e-06
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 134 EDEVFGDSEPELDEESED----EVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPL 189
+ E G PE + E++ E E + E QP E ++ G EA P + G+E
Sbjct: 2095 QPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEG--EAQPESEGVEAQD 2152
Query: 190 EESSHEPEPEP-ESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAK 248
E +PE E E++ EE +P++E E E + A+P S E P+ EA+
Sbjct: 2153 AEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGE------AQPESEGIEAPEAEGEAQ 2206
Query: 249 PEVQS-QPPRVREQRPRERPG 268
PE++ + P E+ E G
Sbjct: 2207 PELEGVEAPEAEEEAQPEPEG 2227
Score = 48.5 bits (114), Expect = 1e-05
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 24/152 (15%)
Query: 139 GDSEPELD-----------EESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEE 187
GD++PE D +E+E EV+E + E P E V G EA P + G+E
Sbjct: 2046 GDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEG--EAQPESEGVEA 2103
Query: 188 PLEESSHE-------PEPEPESETKTEELK-PQVEEKNLEELE--EKSTTPPPAEPVSLP 237
P E + PE E E++ ++E ++ P+ E + E E E A+P S
Sbjct: 2104 PEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEG 2163
Query: 238 QEPPKPRVEAKPEVQS-QPPRVREQRPRERPG 268
E + EA+PE++ + P + E G
Sbjct: 2164 IEAQEAEEEAQPELEGVEAPEAEGEAQPESEG 2195
Score = 48.1 bits (113), Expect = 2e-05
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 136 EVFGDSEPELDE----ESEDEVEEEQEERQPSPEPVQENANSGYYEAHPV------TNGI 185
E G+++PE ++ E+E E++E +EE QP + V+ S EA V T G
Sbjct: 1988 EAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGD 2047
Query: 186 EEPLEESSHEPEPEPES-----ETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQ-- 238
+P + PE E E+ E + E + E ++++ E + P +E V P+
Sbjct: 2048 AQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAE 2107
Query: 239 ---------EPPKPRVEAKPEVQS-QPPRVREQRPRERPG 268
E P+ EA+PE + + P + E G
Sbjct: 2108 GEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEG 2147
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 127 HNDMFRYEDEVFGDSEPELDEESED-EVEEEQEERQPSPEPVQE-----NANSGYYEAHP 180
H D + E GD +P + +E E E + E QP E V+ +A EA P
Sbjct: 1810 HEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQP 1869
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
+ +E P E +PE E + ET E + Q E + E E + P E V E
Sbjct: 1870 ESEDVEAPEAEGEAQPESE-DVETPEAEWEVQPESEGAEAPEAEKEAQPETESV----EA 1924
Query: 241 PKPRVEAKPEVQSQPPRVREQRPRERPG 268
+ E +PE + + E+ +E G
Sbjct: 1925 LETEGEDEPESEGAEAQEAEEAAQEAEG 1952
Score = 46.6 bits (109), Expect = 5e-05
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 140 DSEPELDEESED-EVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEP 198
++E E ESED E E + E QP E V+ +E P + G E P E +PE
Sbjct: 1862 EAEGEAQPESEDVEAPEAEGEAQPESEDVE--TPEAEWEVQPESEGAEAPEAEKEAQPET 1919
Query: 199 EPESETKTE-ELKPQVEEKNLEELEEKS-TTPPPAEPVSLPQEPPKPRVEAKPEVQSQPP 256
E +TE E +P+ E +E EE + +P S E + EA+PE +
Sbjct: 1920 ESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEA 1979
Query: 257 RVREQRPRERPG 268
E +E G
Sbjct: 1980 LEVEVETQEAEG 1991
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Query: 136 EVFGDSEPELDE----ESEDEVEEEQE---------ERQPSPEPVQENANSGYYEAHPVT 182
E G+++PE ++ E+E EV+ E E E QP E V+ G E P +
Sbjct: 1878 EAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEG--EDEPES 1935
Query: 183 NG-----IEEPLEESSHEPEPEP---ESETKTEELKPQVE-----EKNLEELEEKSTTPP 229
G EE +E+ + +PE ES+ EE +P+ E E +E E + P
Sbjct: 1936 EGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQP 1995
Query: 230 PAEPVSLPQ---EPPKPRVEAKPE---VQSQPPRVREQ 261
+E V P+ E + EA+PE V++QP E+
Sbjct: 1996 ESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEE 2033
Score = 44.3 bits (103), Expect = 2e-04
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 134 EDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESS 193
ED ++E E ESED VE + E + PE A EA P T +E E
Sbjct: 1872 EDVEAPEAEGEAQPESED-VETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGE 1930
Query: 194 HEPEPEPESETKTEELKPQVEEKNLEELE--EKSTTPPPAEPVSLPQEPPKPRVEA-KPE 250
EPE E + EE + E + E E E A+P S E + VE + E
Sbjct: 1931 DEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAE 1990
Query: 251 VQSQP 255
++QP
Sbjct: 1991 GEAQP 1995
Score = 40.4 bits (93), Expect = 0.003
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 24/134 (17%)
Query: 140 DSEPELDEESED----EVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEP-LEESSH 194
++E E ESED EVE E +E + EA P + +E P E
Sbjct: 1965 EAEEEAQPESEDVEALEVEVETQEAEG--------------EAQPESEDVEAPEAEGEMQ 2010
Query: 195 EPEPEPESETKTEELKPQVEEKNLEELE-EKSTTPPPAEPVSLPQEPPKPRVEAKPEVQS 253
E E E + E+ E +P+ E + +E+E E T A+P S E P EA+ E Q
Sbjct: 2011 EAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAP----EAEEEAQE 2066
Query: 254 QPPRVREQRPRERP 267
V+E P
Sbjct: 2067 AEGEVQEAEGEAHP 2080
Score = 36.2 bits (82), Expect = 0.062
Identities = 42/146 (28%), Positives = 57/146 (39%), Gaps = 24/146 (16%)
Query: 144 ELDEESEDEVEEEQEERQPSPEPVQENANSGYYEA----HPVTNGIE-----EPLEESSH 194
+L+E E E E +QEE + E ++E G E V G E E LEE
Sbjct: 1337 QLEETKETEGEGQQEE-EAQLEEIEETGGEGLQEEGVQLEEVKEGPEGGLQGEALEEGLK 1395
Query: 195 EPEPEPE---------SETKTEELKPQVEEKNLEELE----EKSTTPPPAEPVSLPQEPP 241
E E PE SE + + K E+ ++E E S P PAE P EPP
Sbjct: 1396 E-EGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPP 1454
Query: 242 KPRVEAKPEVQSQPPRVREQRPRERP 267
E P + + + E+P
Sbjct: 1455 SHLSETDPSASERQSGSQLEPGLEKP 1480
Score = 35.4 bits (80), Expect = 0.11
Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 11/157 (7%)
Query: 134 EDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESS 193
EDE DSE + + +++ E + + E +E + V +EE E
Sbjct: 1273 EDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEAVQ--LEETKTEEG 1330
Query: 194 HEPEPEPESETK-TEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPEVQ 252
+ E ETK TE Q EE LEE+EE E V L + V+ PE
Sbjct: 1331 LQEEGVQLEETKETEGEGQQEEEAQLEEIEETGGEGLQEEGVQLEE------VKEGPEGG 1384
Query: 253 SQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNR 289
Q + E E G P G G+ E + D +
Sbjct: 1385 LQGEALEEGLKEE--GLPEEGSVHGQELSEASSPDGK 1419
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 296 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 355
D ++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V ++
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 356 LIAKPIMFRGEVRLNVEEKKTRAARERE 383
+ K G+V ++ K+ +A + +E
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMKTKE 160
Score = 46.2 bits (108), Expect = 6e-05
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
Query: 359 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGG 403
K + + E+++ + +++ + ++ +RGG R RG GG
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA------RGRGG 265
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 296 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 355
D ++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V ++
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 356 LIAKPIMFRGEVRLNVEEKKTRAARERE 383
+ K G+V ++ K+ +A + +E
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMKTKE 160
Score = 47.4 bits (111), Expect = 3e-05
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
Query: 359 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPG 402
K + + E+++ + +++ + ++ +RGG R R D+ G
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSG 270
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 270 PPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRI 329
PP G + G + N S N D+ ++FVG L D + +LK++F FG VV+ I
Sbjct: 47 PPSGNQNGAEGDQINASKNEE-----DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 330 NTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARE 381
G+ FGF++F D+ V+++L K G V ++ KK A ++
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150
Score = 49.3 bits (116), Expect = 7e-06
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++FVG L + E +++E+F FG + + + K F F+ F + EPV+++L
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 359 KPIMFRG-EVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRD 417
K G + + V + K +++ GG +R R +RG GG G GGG
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNR---NRGNRGSGGGGG--GGGQGSTNY 269
Query: 418 GRGPPPRGG 426
G+ RGG
Sbjct: 270 GKS-QRRGG 277
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 270 PPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRI 329
PP G + G + N S N D+ ++FVG L D + +LK++F FG VV+ I
Sbjct: 47 PPSGNQNGAEGDQINASKNEE-----DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 330 NTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARE 381
G+ FGF++F D+ V+++L K G V ++ KK A ++
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150
Score = 51.6 bits (122), Expect = 1e-06
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++FVG L + E +++E+F FG + + + K F F+ F + EPV+++L
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 359 KPIMFRG-EVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRD-R 416
K G + + V + K +++ GG +R R +RG GG G GGG +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNR---NRGNRGSGGGGG--GGGQSQSWN 269
Query: 417 DGRGPPPRGGMAQKLGSGRGTG 438
G G G + G G G G
Sbjct: 270 QGYGNYWNQGYGYQQGYGPGYG 291
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 56.2 bits (134), Expect = 6e-08
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 359 KPIMFRGEVRLNVEEKKTRAARERE 383
K G+V ++ K+ +A + +E
Sbjct: 158 KEHKLNGKV---IDPKRAKAMKTKE 179
Score = 46.2 bits (108), Expect = 6e-05
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 359 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGG 403
K + + E+++ + +++ + ++ +RGG R RG GG
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA------RGRGG 284
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 56.2 bits (134), Expect = 6e-08
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 359 KPIMFRGEVRLNVEEKKTRAARERE 383
K G+V ++ K+ +A + +E
Sbjct: 158 KEHKLNGKV---IDPKRAKAMKTKE 179
Score = 47.4 bits (111), Expect = 3e-05
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 359 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPG 402
K + + E+++ + +++ + ++ +RGG R R D+ G
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSG 289
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 162 PSPEPVQENANSGYYEAHPVTNGIEEPLEES-----SHEPEPEPESETKTEELKPQVEEK 216
PSP P + G P++N + P EE+ H+PEPE E+E T + Q+E +
Sbjct: 187 PSPGPEELPQEGGA----PLSNNWQNPGEETHVEAREHQPEPEEETEQPTLDYNDQIERE 242
Query: 217 NLEELE----EKSTTPPPA---EPVSLPQEPPKPRVEA-KPEVQSQPPRVREQRPRERPG 268
+ E+ E +K PPP+ P + EPP+ + A PE + +PP +P
Sbjct: 243 DYEDFEYIRRQKQPRPPPSRRRRPERVWPEPPEEKAPAPAPEERIEPP--------VKPL 294
Query: 269 FPPRGPRPGRGDMEQNDSD 287
PP P G G + N D
Sbjct: 295 LPPLPPDYGDGYVIPNYDD 313
Score = 43.1 bits (100), Expect = 5e-04
Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 140 DSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPE 199
D +++ E ++ E + ++QP P P + + EP EE + P PE
Sbjct: 234 DYNDQIEREDYEDFEYIRRQKQPRPPPSRRRRPERVWP---------EPPEEKAPAPAPE 284
Query: 200 PESETKTEELKPQVEEK--------NLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPEV 251
E + L P + N ++++ PPP +P + Q + KP+
Sbjct: 285 ERIEPPVKPLLPPLPPDYGDGYVIPNYDDMDYYFGPPPPQKPDAERQTDEEKEELKKPKK 344
Query: 252 QSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDE 311
+ P+ + G + PR G ++E+ + ++ P +G H I++
Sbjct: 345 EDSSPKEETDKWAVEKGKDHKEPRKGE-ELEEEWTPTEKVKCPP------IGMESHRIED 397
Query: 312 NELK 315
N+++
Sbjct: 398 NQIR 401
Score = 39.3 bits (90), Expect = 0.007
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 147 EESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKT 206
E+++D+ ++ ++++ P V + + G P G E+P +++ +P+ +P TK
Sbjct: 88 EKTKDKGKKGKKDKGPK---VPKESLEG--SPRPPKKGKEKP-PKATKKPKEKPPKATKK 141
Query: 207 EELKPQVEEKNLEELEEKSTTPPPA---EPVSLPQE--------PPKPRVEAKPEVQSQP 255
+ KP K +E K+T PP+ P+ P E PP P E P+ P
Sbjct: 142 PKEKPPKATKKPKEKPPKATKKPPSGKRPPILAPSETLEWPLPPPPSPGPEELPQEGGAP 201
Query: 256 PRVREQRPRERPGFPPRGPRP 276
Q P E R +P
Sbjct: 202 LSNNWQNPGEETHVEAREHQP 222
Score = 38.9 bits (89), Expect = 0.010
Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 25/151 (16%)
Query: 148 ESEDEVEEEQEERQPSPEPVQ--ENANSGYYEAHPVTNGIEEPLEES------------- 192
E E E E+ E P PEP A +G E P E++
Sbjct: 44 ELEPEPREDDVEAPPPPEPTPRVRKAQAGGKPGKRPGTAAEVPPEKTKDKGKKGKKDKGP 103
Query: 193 -----SHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPK--PRV 245
S E P P + K KP K +E K+T P +P ++P + P+
Sbjct: 104 KVPKESLEGSPRPPKKGKE---KPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKA 160
Query: 246 EAKPEVQSQPPRVREQRPRERPGFPPRGPRP 276
KP +PP + E P PP P P
Sbjct: 161 TKKPPSGKRPPILAPSETLEWPLPPPPSPGP 191
Score = 35.0 bits (79), Expect = 0.14
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 151 DEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELK 210
+E E E QP PE E Y + + + +P P P + E +
Sbjct: 211 EETHVEAREHQPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRRPERVW 270
Query: 211 PQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKP 243
P E EEK+ P P E + P +P P
Sbjct: 271 P-------EPPEEKAPAPAPEERIEPPVKPLLP 296
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 54.7 bits (130), Expect = 2e-07
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 260 EQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFM 319
+ +P G P RP G + SDN + S+++FVG +PH+ E EL+E+F
Sbjct: 81 DPKPCTPRGMQPERTRPKEGWQKGPRSDNSK------SNKIFVGGIPHNCGETELREYFK 134
Query: 320 SFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 354
FG V E+ + + FGF+ F+D + V +
Sbjct: 135 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 38.5 bits (88), Expect = 0.013
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LFVG L + L+ +F +G VV+ I + FGFV F D V +L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 359 KPIMFRGEVRLNVEEK 374
+P G N++ K
Sbjct: 71 RPHTLDGR---NIDPK 83
Score = 31.6 bits (70), Expect = 1.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 228 PPPAEPVSLPQEPPKPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 276
PPPA P + P P P +A P++ S+PP + P + G P P
Sbjct: 311 PPPATPGAAPLAFPPPPSQAAPDM-SKPPTAQPDFPYGQYGLGSYSPAP 358
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 54.7 bits (130), Expect = 2e-07
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 260 EQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFM 319
+ +P G P RP G + SDN + S+++FVG +PH+ E EL+E+F
Sbjct: 81 DPKPCTPRGMQPERTRPKEGWQKGPRSDNSK------SNKIFVGGIPHNCGETELREYFK 134
Query: 320 SFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 354
FG V E+ + + FGF+ F+D + V +
Sbjct: 135 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 38.5 bits (88), Expect = 0.013
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LFVG L + L+ +F +G VV+ I + FGFV F D V +L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 359 KPIMFRGEVRLNVEEK 374
+P G N++ K
Sbjct: 71 RPHTLDGR---NIDPK 83
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 296 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 355
D ++F+G L D + +L E+ FG VV+ I T V G+ FGFV+F D+ V ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 356 LIAKPIMFRGEVRLNVEEKKTRAARERE 383
L K G++ ++ K+ +A + +E
Sbjct: 206 LELKEHKLDGKL---IDPKRAKALKGKE 230
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 36/144 (25%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNV--VELRINTKGVGGKLPNFGFVVFDDSEPVQRIL 356
++FVG L D E ++KE+F +FG + +EL ++TK + F F+ + D EPV+++L
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTK--TNERRGFCFITYTDEEPVKKLL 291
Query: 357 IAKPIMF-RGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRD 415
++ G+ + V + K ++++ + GG RG GG
Sbjct: 292 ESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGG----------------RGAAAGG---- 331
Query: 416 RDGRGPPPRGGMAQKLGSGRGTGQ 439
RGG G GRG GQ
Sbjct: 332 --------RGGTR---GRGRGQGQ 344
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 52.8 bits (125), Expect = 6e-07
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 134 EDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESS 193
E+E+ + E + EE E+E EEE ++++ E +N G + E+ E+
Sbjct: 378 EEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDE------EDEDEDGG 431
Query: 194 HEPEPEPESETKTEELKPQVEEKNLEE-----LEEKSTTPPPAEPVSLPQEPPKPRVEAK 248
+PE EP+ + TEE +VEE+ L+E L+E P S P A+
Sbjct: 432 QKPEGEPQQDPGTEETYGEVEEEPLDEAQDDDLDELMEMEPTFVHASSQTSGPTSGYHAE 491
Query: 249 PEVQSQPPRVREQRPRERPGFPPRGPRPG 277
+ + PP ++ R R + P PG
Sbjct: 492 NFLGASPPIIQPSRRRNQNRVPLLEGLPG 520
Score = 33.1 bits (74), Expect = 0.53
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 196 PEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPEVQSQP 255
P P E + +++L V ++++ST PA+P LP PP P +P
Sbjct: 90 PPPRAEPDCISDDLLINV-------IQDRSTPDGPADPPLLPIPPPP---ALPPPASKEP 139
Query: 256 PRVREQRPRERPGFPP 271
P P ERP P
Sbjct: 140 PPQPPLAPLERPEIEP 155
Score = 31.6 bits (70), Expect = 1.5
Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 34/207 (16%)
Query: 107 KFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEP 166
+F+ F+ + + N+F F ++ ++ +LDE + VE E++ R P P P
Sbjct: 259 QFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIERKVRVPKPIP 318
Query: 167 VQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPE-----------------------SE 203
+ N + P N EE E+ + E E + E
Sbjct: 319 LPGVRNI-IFPFAPSPN--EEESEDEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKE 375
Query: 204 TKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKPRVEAKPEVQSQPPRVREQRP 263
+ EE+K + E K EE EE+ E + +E + R + + E +S+ ++
Sbjct: 376 KEEEEMKKEEEMKKKEEKEEEE-----EEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDG 430
Query: 264 RERPGFPPR---GPRPGRGDMEQNDSD 287
++P P+ G G++E+ D
Sbjct: 431 GQKPEGEPQQDPGTEETYGEVEEEPLD 457
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 52.0 bits (123), Expect = 1e-06
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 287 DNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 346
D++R Y ++FVG + D +E+ L++++ +G + I T GK +F FV F
Sbjct: 94 DSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTF 153
Query: 347 DDSEPVQRILIAKPIMFRG---EVRLNVEEKKTRAA--RERETRGGGDDRRDIRRNDRGP 401
D+ + +I+I K + G EVR + ++K +A +R G G+
Sbjct: 154 DNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNF----------- 202
Query: 402 GGPRGIVGGGMMRDRDGRG 420
GG RG GG D G G
Sbjct: 203 GGGRG--GGFSGNDNFGHG 219
Score = 33.9 bits (76), Expect = 0.31
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LF+G L + + L+ +G + E + + FGFV + E V + A
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGG 387
+P G V E KT +RE R G
Sbjct: 75 RPHKMGG----RVVEPKTAVSREDSQRPG 99
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 52.0 bits (123), Expect = 1e-06
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 287 DNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 346
D++R Y ++FVG + D +E+ L++++ +G + I T GK +F FV F
Sbjct: 94 DSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTF 153
Query: 347 DDSEPVQRILIAKPIMFRG---EVRLNVEEKKTRAA--RERETRGGGDDRRDIRRNDRGP 401
D+ + +I+I K + G EVR + ++K +A +R G G+
Sbjct: 154 DNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNF----------- 202
Query: 402 GGPRGIVGGGMMRDRDGRG 420
GG RG GG D G G
Sbjct: 203 GGGRG--GGFSGNDNFGHG 219
Score = 33.9 bits (76), Expect = 0.31
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LF+G L + + L+ +G + E + + FGFV + E V + A
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGG 387
+P G V E KT +RE R G
Sbjct: 75 RPHKMGG----RVVEPKTAVSREDSQRPG 99
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 52.0 bits (123), Expect = 1e-06
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 287 DNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 346
D++R Y ++FVG + D +E+ L++++ +G + I T GK +F FV F
Sbjct: 94 DSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTF 153
Query: 347 DDSEPVQRILIAKPIMFRG---EVRLNVEEKKTRAA--RERETRGGGDDRRDIRRNDRGP 401
D+ + +I+I K + G EVR + ++K +A +R G G+
Sbjct: 154 DNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNF----------- 202
Query: 402 GGPRGIVGGGMMRDRDGRG 420
GG RG GG D G G
Sbjct: 203 GGGRG--GGFSGNDNFGHG 219
Score = 33.9 bits (76), Expect = 0.31
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
+LF+G L + + L+ +G + E + + FGFV + E V + A
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
Query: 359 KPIMFRGEVRLNVEEKKTRAARERETRGG 387
+P G V E KT +RE R G
Sbjct: 75 RPHKMGG----RVVEPKTAVSREDSQRPG 99
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,312,367
Number of Sequences: 37866
Number of extensions: 1536052
Number of successful extensions: 22347
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 1308
Number of HSP's that attempted gapping in prelim test: 10949
Number of HSP's gapped (non-prelim): 7750
length of query: 449
length of database: 18,247,518
effective HSP length: 106
effective length of query: 343
effective length of database: 14,233,722
effective search space: 4882166646
effective search space used: 4882166646
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.