Guide to the Human Genome
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Name: DAZAP1 Sequence: fasta or formatted (407aa) NCBI GI: 25470886
Description:

DAZ associated protein 1 isoform b

Referenced in:

hnRNP
Testes and Sperm

Other entries for this name:
alt prot [378aa] DAZ associated protein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         25           2
 C cysteine            1.0          4           1
 D aspartate           4.4         18           1
 E glutamate           3.4         14           1
 F phenylalanine       5.9         24           1
 G glycine            14.5         59           2
 H histidine           1.5          6           1
 I isoleucine          2.5         10           1
 K lysine              4.4         18           2
 L leucine             2.0          8           1
 M methionine          2.0          8           1
 N asparagine          3.2         13           2
 P proline            16.5         67           6
 Q glutamine           7.1         29           2
 R arginine            4.4         18           2
 S serine              6.4         26           1
 T threonine           4.2         17           2
 V valine              5.7         23           2
 W tryptophan          1.5          6           1
 Y tyrosine            3.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DAZ associated protein 1 isoform b 
DAZAP1                0.852   DAZ associated protein 1 isoform a 
MSI2                  0.177   musashi 2 isoform a 
MSI1                  0.171   musashi 1 
MSI2                  0.165   musashi 2 isoform b 
HNRNPAB               0.159   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPA2B1             0.150   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.150   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPD                0.149   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPAB               0.148   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPD                0.145   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRPDL                0.139   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPA1               0.139   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA1L2             0.137   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.137   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1               0.136   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPA3               0.135   heterogeneous nuclear ribonucleoprotein A3 
HNRNPD                0.134   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPD                0.131   heterogeneous nuclear ribonucleoprotein D isoform c ...
HNRNPA0               0.130   heterogeneous nuclear ribonucleoprotein A0 
LOC120364             0.116   PREDICTED: similar to heterogeneous nuclear ribonuc...
LOC120364             0.116   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.116   PREDICTED: similar to heterogeneous nuclear ribonucl...
SF3B4                 0.093   splicing factor 3b, subunit 4 
TARDBP                0.080   TAR DNA binding protein 
TIAL1                 0.079   TIA-1 related protein isoform 2 
TIAL1                 0.079   TIA-1 related protein isoform 1 
RBMX                  0.070   RNA binding motif protein, X-linked 
RBM14                 0.069   RNA binding motif protein 14 
PRB1                  0.067   proline-rich protein BstNI subfamily 1 isoform 1 pre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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