Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC120364 Sequence: fasta or formatted (321aa) NCBI GI: 89035135
Description:

PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A1-like

Referenced in:

hnRNP

Other entries for this name:
alt prot [321aa] PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A1-...
alt mRNA [321aa] PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A1-...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         11           2
 C cysteine            1.6          5           1
 D aspartate           4.7         15           1
 E glutamate           5.3         17           2
 F phenylalanine       6.2         20           1
 G glycine            17.8         57           4
 H histidine           2.5          8           1
 I isoleucine          2.5          8           1
 K lysine              6.9         22           2
 L leucine             3.1         10           1
 M methionine          2.2          7           1
 N asparagine          6.5         21           2
 P proline             3.4         11           1
 Q glutamine           4.0         13           1
 R arginine            5.9         19           2
 S serine             10.9         35           6
 T threonine           4.0         13           1
 V valine              5.0         16           2
 W tryptophan          0.3          1           1
 Y tyrosine            3.7         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to heterogeneous nuclear ribonucl... 
LOC120364             1.000   PREDICTED: similar to heterogeneous nuclear ribonucl...
LOC120364             0.997   PREDICTED: similar to heterogeneous nuclear ribonuc...
HNRNPA1               0.847   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
HNRNPA1L2             0.821   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.821   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1               0.810   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA3               0.572   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA2B1             0.524   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.524   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
HNRNPA0               0.380   heterogeneous nuclear ribonucleoprotein A0 
HNRNPD                0.238   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.236   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPAB               0.223   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRPDL                0.212   heterogeneous nuclear ribonucleoprotein D-like [Homo...
HNRNPAB               0.201   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPD                0.196   heterogeneous nuclear ribonucleoprotein D isoform d ...
HNRNPD                0.195   heterogeneous nuclear ribonucleoprotein D isoform c ...
MSI2                  0.185   musashi 2 isoform a 
MSI1                  0.178   musashi 1 
MSI2                  0.178   musashi 2 isoform b 
LOC100294395          0.165   PREDICTED: similar to serum response factor-related...
DAZAP1                0.155   DAZ associated protein 1 isoform a 
DAZAP1                0.155   DAZ associated protein 1 isoform b 
TARDBP                0.124   TAR DNA binding protein 
KRT10                 0.083   keratin 10 
CIRBP                 0.080   cold inducible RNA binding protein 
TAF15                 0.073   TBP-associated factor 15 isoform 2 
TAF15                 0.073   TBP-associated factor 15 isoform 1 
KRT9                  0.070   keratin 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press