PABPC3 29708

Name: PABPC3	Sequence: fasta or formatted (631aa)		NCBI GI: 45238849
Description: poly(A) binding protein, cytoplasmic 3		Referenced in: Polyadenylation RNases and RNA Stability
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.1 64 8 C cysteine 0.6 4 1 D aspartate 3.8 24 2 E glutamate 5.9 37 2 F phenylalanine 4.1 26 1 G glycine 6.3 40 2 H histidine 1.9 12 1 I isoleucine 3.3 21 1 K lysine 6.8 43 2 L leucine 6.2 39 2 M methionine 3.6 23 2 N asparagine 4.6 29 2 P proline 6.5 41 2 Q glutamine 5.9 37 2 R arginine 6.8 43 1 S serine 6.7 42 2 T threonine 5.7 36 1 V valine 7.6 48 2 W tryptophan 0.3 2 1 Y tyrosine 3.2 20 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly(A) binding protein, cytoplasmic 3 PABPC1 0.916 poly(A) binding protein, cytoplasmic 1 PABPC4 0.697 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.692 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.688 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC1L 0.622 poly(A)-binding protein, cytoplasmic 1-like PABPC4L 0.395 poly(A) binding protein, cytoplasmic 4-like PABPC5 0.347 poly(A) binding protein, cytoplasmic 5 PABPC1L2B 0.218 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... PABPC1L2A 0.218 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... LOC100291776 0.094 PREDICTED: similar to poly(A) binding protein, cyto... TIA1 0.077 TIA1 protein isoform 2 TIAL1 0.076 TIA-1 related protein isoform 1 TIA1 0.075 TIA1 protein isoform 1 SF3B4 0.072 splicing factor 3b, subunit 4 ELAVL1 0.071 ELAV-like 1 TIAL1 0.070 TIA-1 related protein isoform 2 NCL 0.063 nucleolin ELAVL2 0.063 ELAV (embryonic lethal, abnormal vision, Drosophila... ELAVL4 0.060 ELAV-like 4 isoform 5 ELAVL4 0.060 ELAV-like 4 isoform 4 ELAVL4 0.060 ELAV-like 4 isoform 3 ELAVL4 0.060 ELAV-like 4 isoform 2 ELAVL3 0.059 ELAV-like protein 3 isoform 2 PUF60 0.056 poly-U binding splicing factor 60KDa isoform c [Hom... PUF60 0.056 poly-U binding splicing factor 60KDa isoform a [Homo... PUF60 0.055 poly-U binding splicing factor 60KDa isoform b [Homo... SYNCRIP 0.052 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.052 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.052 synaptotagmin binding, cytoplasmic RNA interacting ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.