Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ELAVL4 Sequence: fasta or formatted (366aa) NCBI GI: 221316767
Description:

ELAV-like 4 isoform 2

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [380aa] ELAV-like 4 isoform 1
alt prot [383aa] ELAV-like 4 isoform 3
alt prot [366aa] ELAV-like 4 isoform 4
alt prot [369aa] ELAV-like 4 isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         19           2
 C cysteine            1.1          4           1
 D aspartate           4.1         15           2
 E glutamate           3.8         14           2
 F phenylalanine       4.4         16           1
 G glycine             8.2         30           1
 H histidine           1.1          4           2
 I isoleucine          6.3         23           2
 K lysine              5.7         21           1
 L leucine             7.7         28           2
 M methionine          3.0         11           1
 N asparagine          7.7         28           2
 P proline             5.2         19           1
 Q glutamine           5.2         19           1
 R arginine            5.2         19           2
 S serine              9.3         34           2
 T threonine           7.1         26           2
 V valine              6.0         22           1
 W tryptophan          0.5          2           1
 Y tyrosine            3.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ELAV-like 4 isoform 2 
ELAVL4                0.996   ELAV-like 4 isoform 3 
ELAVL4                0.994   ELAV-like 4 isoform 4 
ELAVL4                0.993   ELAV-like 4 isoform 5 
ELAVL4                0.986   ELAV-like 4 isoform 1 
ELAVL2                0.889   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL3                0.795   ELAV-like protein 3 isoform 2 
ELAVL3                0.786   ELAV-like protein 3 isoform 1 
ELAVL1                0.652   ELAV-like 1 
RBMS1                 0.128   RNA binding motif, single stranded interacting protei...
RBMS1                 0.128   RNA binding motif, single stranded interacting protei...
PABPC1L               0.127   poly(A)-binding protein, cytoplasmic 1-like 
RBMS3                 0.124   RNA binding motif, single stranded interacting prote...
RBMS3                 0.124   RNA binding motif, single stranded interacting prote...
RBMS3                 0.124   RNA binding motif, single stranded interacting prote...
PABPC4                0.116   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.116   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.116   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC1                0.116   poly(A) binding protein, cytoplasmic 1 
RBMS2                 0.116   RNA binding motif, single stranded interacting protei...
TIAL1                 0.111   TIA-1 related protein isoform 1 
TIA1                  0.110   TIA1 protein isoform 1 
TIAL1                 0.106   TIA-1 related protein isoform 2 
TIA1                  0.104   TIA1 protein isoform 2 
PABPC3                0.104   poly(A) binding protein, cytoplasmic 3 
PABPC4L               0.096   poly(A) binding protein, cytoplasmic 4-like 
PABPC1L2B             0.093   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1L2A             0.093   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
PABPC5                0.087   poly(A) binding protein, cytoplasmic 5 
SF3B4                 0.087   splicing factor 3b, subunit 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press