Guide to the Human Genome
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Name: ELAVL2 Sequence: fasta or formatted (359aa) NCBI GI: 115511032
Description:

ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         23           2
 C cysteine            1.4          5           1
 D aspartate           4.2         15           1
 E glutamate           4.2         15           2
 F phenylalanine       4.2         15           1
 G glycine             8.4         30           1
 H histidine           0.6          2           1
 I isoleucine          7.0         25           2
 K lysine              6.1         22           1
 L leucine             7.8         28           2
 M methionine          2.5          9           1
 N asparagine          8.4         30           3
 P proline             5.3         19           2
 Q glutamine           5.3         19           2
 R arginine            4.7         17           2
 S serine              7.0         25           2
 T threonine           7.8         28           2
 V valine              5.0         18           1
 W tryptophan          0.6          2           1
 Y tyrosine            3.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ELAV (embryonic lethal, abnormal vision, Drosophila... 
ELAVL4                0.903   ELAV-like 4 isoform 5 
ELAVL4                0.903   ELAV-like 4 isoform 4 
ELAVL4                0.903   ELAV-like 4 isoform 3 
ELAVL4                0.903   ELAV-like 4 isoform 2 
ELAVL4                0.888   ELAV-like 4 isoform 1 
ELAVL3                0.798   ELAV-like protein 3 isoform 2 
ELAVL3                0.788   ELAV-like protein 3 isoform 1 
ELAVL1                0.668   ELAV-like 1 
RBMS1                 0.145   RNA binding motif, single stranded interacting protei...
RBMS1                 0.145   RNA binding motif, single stranded interacting protei...
PABPC1L               0.138   poly(A)-binding protein, cytoplasmic 1-like 
RBMS3                 0.132   RNA binding motif, single stranded interacting prote...
RBMS3                 0.132   RNA binding motif, single stranded interacting prote...
RBMS3                 0.130   RNA binding motif, single stranded interacting prote...
RBMS2                 0.126   RNA binding motif, single stranded interacting protei...
PABPC1                0.123   poly(A) binding protein, cytoplasmic 1 
PABPC4                0.122   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.122   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.122   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
TIAL1                 0.115   TIA-1 related protein isoform 1 
PABPC3                0.110   poly(A) binding protein, cytoplasmic 3 
TIA1                  0.109   TIA1 protein isoform 1 
TIAL1                 0.107   TIA-1 related protein isoform 2 
TIA1                  0.103   TIA1 protein isoform 2 
PABPC4L               0.097   poly(A) binding protein, cytoplasmic 4-like 
PABPC1L2B             0.096   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1L2A             0.096   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
PABPC5                0.093   poly(A) binding protein, cytoplasmic 5 
SF3B4                 0.092   splicing factor 3b, subunit 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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