PABPC5 9779

Name: PABPC5	Sequence: fasta or formatted (382aa)		NCBI GI: 18201888
Description: poly(A) binding protein, cytoplasmic 5		Referenced in: Polyadenylation RNases and RNA Stability
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.1 27 3 C cysteine 1.6 6 1 D aspartate 6.5 25 2 E glutamate 6.3 24 2 F phenylalanine 6.3 24 1 G glycine 8.4 32 1 H histidine 1.3 5 1 I isoleucine 4.5 17 1 K lysine 8.9 34 4 L leucine 7.6 29 1 M methionine 2.1 8 2 N asparagine 5.0 19 2 P proline 4.2 16 2 Q glutamine 1.6 6 1 R arginine 8.6 33 3 S serine 5.5 21 2 T threonine 3.1 12 1 V valine 7.3 28 2 W tryptophan 0.8 3 1 Y tyrosine 3.4 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly(A) binding protein, cytoplasmic 5 PABPC4 0.619 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.619 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.619 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC1 0.606 poly(A) binding protein, cytoplasmic 1 PABPC3 0.567 poly(A) binding protein, cytoplasmic 3 PABPC4L 0.567 poly(A) binding protein, cytoplasmic 4-like PABPC1L 0.551 poly(A)-binding protein, cytoplasmic 1-like PABPC1L2B 0.281 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... PABPC1L2A 0.281 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... SF3B4 0.113 splicing factor 3b, subunit 4 ELAVL1 0.111 ELAV-like 1 TIAL1 0.109 TIA-1 related protein isoform 1 TIA1 0.105 TIA1 protein isoform 1 TIA1 0.104 TIA1 protein isoform 2 TIAL1 0.099 TIA-1 related protein isoform 2 NCL 0.092 nucleolin ELAVL2 0.087 ELAV (embryonic lethal, abnormal vision, Drosophila... ELAVL3 0.084 ELAV-like protein 3 isoform 2 ELAVL4 0.083 ELAV-like 4 isoform 5 ELAVL4 0.083 ELAV-like 4 isoform 4 ELAVL4 0.083 ELAV-like 4 isoform 3 ELAVL4 0.083 ELAV-like 4 isoform 2 PUF60 0.080 poly-U binding splicing factor 60KDa isoform c [Hom... PUF60 0.080 poly-U binding splicing factor 60KDa isoform a [Homo... ELAVL3 0.080 ELAV-like protein 3 isoform 1 PUF60 0.077 poly-U binding splicing factor 60KDa isoform b [Homo... HNRNPM 0.077 heterogeneous nuclear ribonucleoprotein M isoform b... RBM19 0.076 RNA binding motif protein 19 RBM19 0.076 RNA binding motif protein 19 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.