Guide to the Human Genome
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Name: PABPC1L2A Sequence: fasta or formatted (200aa) NCBI GI: 61175237
Description:

poly(A) binding protein, cytoplasmic 1-like 2A

Referenced in:

Polyadenylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         16           1
 C cysteine            1.5          3           1
 D aspartate           6.0         12           1
 E glutamate           7.0         14           2
 F phenylalanine       5.5         11           1
 G glycine             7.0         14           1
 H histidine           1.5          3           1
 I isoleucine          6.0         12           1
 K lysine              8.0         16           1
 L leucine             6.5         13           1
 M methionine          2.5          5           1
 N asparagine          4.5          9           1
 P proline             3.5          7           1
 Q glutamine           3.0          6           2
 R arginine            8.0         16           2
 S serine              6.5         13           1
 T threonine           3.5          7           1
 V valine              6.5         13           1
 W tryptophan          1.0          2           1
 Y tyrosine            4.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 
PABPC1L2B             1.000   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1                0.795   poly(A) binding protein, cytoplasmic 1 
PABPC4                0.771   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.771   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.771   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC1L               0.718   poly(A)-binding protein, cytoplasmic 1-like 
PABPC3                0.705   poly(A) binding protein, cytoplasmic 3 
PABPC4L               0.613   poly(A) binding protein, cytoplasmic 4-like 
PABPC5                0.555   poly(A) binding protein, cytoplasmic 5 
SF3B4                 0.211   splicing factor 3b, subunit 4 
ELAVL2                0.176   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL4                0.174   ELAV-like 4 isoform 1 
ELAVL4                0.174   ELAV-like 4 isoform 5 
ELAVL4                0.174   ELAV-like 4 isoform 4 
ELAVL4                0.174   ELAV-like 4 isoform 3 
ELAVL4                0.174   ELAV-like 4 isoform 2 
ELAVL3                0.171   ELAV-like protein 3 isoform 1 
ELAVL3                0.171   ELAV-like protein 3 isoform 2 
PUF60                 0.166   poly-U binding splicing factor 60KDa isoform c [Hom...
PUF60                 0.166   poly-U binding splicing factor 60KDa isoform b [Homo...
PUF60                 0.166   poly-U binding splicing factor 60KDa isoform a [Homo...
ELAVL1                0.163   ELAV-like 1 
TIA1                  0.147   TIA1 protein isoform 1 
TIAL1                 0.147   TIA-1 related protein isoform 2 
TIAL1                 0.147   TIA-1 related protein isoform 1 
TIA1                  0.142   TIA1 protein isoform 2 
RBMS1                 0.137   RNA binding motif, single stranded interacting protei...
RBMS1                 0.137   RNA binding motif, single stranded interacting protei...
RBMS3                 0.129   RNA binding motif, single stranded interacting prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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