PABPC1 30216

Name: PABPC1	Sequence: fasta or formatted (636aa)		NCBI GI: 46367787
Description: poly(A) binding protein, cytoplasmic 1		Referenced in: Polyadenylation RNases and RNA Stability
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.5 67 7 C cysteine 0.6 4 1 D aspartate 4.1 26 2 E glutamate 6.1 39 2 F phenylalanine 4.2 27 1 G glycine 6.3 40 2 H histidine 1.6 10 1 I isoleucine 3.6 23 1 K lysine 6.4 41 2 L leucine 6.1 39 2 M methionine 4.4 28 2 N asparagine 4.2 27 1 P proline 7.4 47 2 Q glutamine 6.4 41 2 R arginine 6.8 43 2 S serine 6.1 39 2 T threonine 4.7 30 1 V valine 6.9 44 2 W tryptophan 0.3 2 1 Y tyrosine 3.0 19 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly(A) binding protein, cytoplasmic 1 PABPC3 0.907 poly(A) binding protein, cytoplasmic 3 PABPC4 0.757 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.753 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.749 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC1L 0.662 poly(A)-binding protein, cytoplasmic 1-like PABPC4L 0.419 poly(A) binding protein, cytoplasmic 4-like PABPC5 0.366 poly(A) binding protein, cytoplasmic 5 PABPC1L2B 0.243 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... PABPC1L2A 0.243 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... LOC100291776 0.098 PREDICTED: similar to poly(A) binding protein, cyto... SF3B4 0.077 splicing factor 3b, subunit 4 ELAVL1 0.076 ELAV-like 1 TIA1 0.076 TIA1 protein isoform 2 TIA1 0.073 TIA1 protein isoform 1 TIAL1 0.072 TIA-1 related protein isoform 1 ELAVL2 0.069 ELAV (embryonic lethal, abnormal vision, Drosophila... ELAVL3 0.068 ELAV-like protein 3 isoform 1 TIAL1 0.067 TIA-1 related protein isoform 2 ELAVL4 0.066 ELAV-like 4 isoform 5 ELAVL4 0.066 ELAV-like 4 isoform 4 ELAVL4 0.066 ELAV-like 4 isoform 3 ELAVL4 0.066 ELAV-like 4 isoform 2 ELAVL3 0.065 ELAV-like protein 3 isoform 2 NCL 0.064 nucleolin ELAVL4 0.062 ELAV-like 4 isoform 1 PUF60 0.059 poly-U binding splicing factor 60KDa isoform c [Hom... PUF60 0.059 poly-U binding splicing factor 60KDa isoform a [Homo... PUF60 0.056 poly-U binding splicing factor 60KDa isoform b [Homo... RBMS1 0.053 RNA binding motif, single stranded interacting protei... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.