PABPC4 12266

Name: PABPC4	Sequence: fasta or formatted (660aa)		NCBI GI: 208431833
Description: poly A binding protein, cytoplasmic 4 isoform 1		Referenced in: Polyadenylation RNases and RNA Stability Small RNAs in RNA Processing
Other entries for this name: alt prot [631aa] poly A binding protein, cytoplasmic 4 isoform 3 alt prot [644aa] poly A binding protein, cytoplasmic 4 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.4 75 4 C cysteine 0.9 6 1 D aspartate 4.1 27 2 E glutamate 6.4 42 2 F phenylalanine 4.2 28 1 G glycine 7.6 50 2 H histidine 1.7 11 2 I isoleucine 3.6 24 2 K lysine 7.1 47 2 L leucine 7.3 48 2 M methionine 3.3 22 1 N asparagine 4.1 27 1 P proline 6.2 41 2 Q glutamine 6.1 40 2 R arginine 6.1 40 2 S serine 6.8 45 2 T threonine 3.6 24 3 V valine 6.5 43 2 W tryptophan 0.3 2 1 Y tyrosine 2.7 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC4 0.967 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.941 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC1 0.725 poly(A) binding protein, cytoplasmic 1 PABPC3 0.659 poly(A) binding protein, cytoplasmic 3 PABPC1L 0.598 poly(A)-binding protein, cytoplasmic 1-like PABPC4L 0.417 poly(A) binding protein, cytoplasmic 4-like PABPC5 0.362 poly(A) binding protein, cytoplasmic 5 PABPC1L2B 0.228 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... PABPC1L2A 0.228 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... SF3B4 0.078 splicing factor 3b, subunit 4 LOC100291776 0.077 PREDICTED: similar to poly(A) binding protein, cyto... TIA1 0.070 TIA1 protein isoform 2 TIAL1 0.069 TIA-1 related protein isoform 1 TIA1 0.069 TIA1 protein isoform 1 NCL 0.069 nucleolin ELAVL1 0.068 ELAV-like 1 ELAVL3 0.067 ELAV-like protein 3 isoform 1 ELAVL3 0.066 ELAV-like protein 3 isoform 2 ELAVL2 0.066 ELAV (embryonic lethal, abnormal vision, Drosophila... TIAL1 0.065 TIA-1 related protein isoform 2 ELAVL4 0.065 ELAV-like 4 isoform 1 ELAVL4 0.064 ELAV-like 4 isoform 5 ELAVL4 0.064 ELAV-like 4 isoform 4 ELAVL4 0.064 ELAV-like 4 isoform 3 ELAVL4 0.064 ELAV-like 4 isoform 2 PUF60 0.063 poly-U binding splicing factor 60KDa isoform c [Hom... PUF60 0.063 poly-U binding splicing factor 60KDa isoform a [Homo... PUF60 0.060 poly-U binding splicing factor 60KDa isoform b [Homo... SYNCRIP 0.054 synaptotagmin binding, cytoplasmic RNA interacting ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.