PABPC4 28904

Name: PABPC4	Sequence: fasta or formatted (644aa)		NCBI GI: 4504715
Description: poly A binding protein, cytoplasmic 4 isoform 2		Referenced in: Polyadenylation RNases and RNA Stability Small RNAs in RNA Processing
Other entries for this name: alt prot [660aa] poly A binding protein, cytoplasmic 4 isoform 1 alt prot [631aa] poly A binding protein, cytoplasmic 4 isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.3 73 4 C cysteine 0.9 6 1 D aspartate 4.2 27 2 E glutamate 6.5 42 2 F phenylalanine 4.3 28 1 G glycine 7.5 48 2 H histidine 1.7 11 2 I isoleucine 3.7 24 2 K lysine 7.3 47 2 L leucine 7.3 47 2 M methionine 3.4 22 1 N asparagine 4.0 26 1 P proline 6.1 39 2 Q glutamine 6.1 39 2 R arginine 5.9 38 2 S serine 6.8 44 2 T threonine 3.3 21 1 V valine 6.5 42 2 W tryptophan 0.3 2 1 Y tyrosine 2.8 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.992 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC4 0.950 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC1 0.747 poly(A) binding protein, cytoplasmic 1 PABPC3 0.680 poly(A) binding protein, cytoplasmic 3 PABPC1L 0.613 poly(A)-binding protein, cytoplasmic 1-like PABPC4L 0.428 poly(A) binding protein, cytoplasmic 4-like PABPC5 0.372 poly(A) binding protein, cytoplasmic 5 PABPC1L2B 0.234 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... PABPC1L2A 0.234 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... SF3B4 0.080 splicing factor 3b, subunit 4 LOC100291776 0.079 PREDICTED: similar to poly(A) binding protein, cyto... TIA1 0.072 TIA1 protein isoform 2 TIAL1 0.071 TIA-1 related protein isoform 1 TIA1 0.071 TIA1 protein isoform 1 NCL 0.070 nucleolin ELAVL1 0.070 ELAV-like 1 ELAVL3 0.069 ELAV-like protein 3 isoform 1 ELAVL3 0.068 ELAV-like protein 3 isoform 2 ELAVL2 0.068 ELAV (embryonic lethal, abnormal vision, Drosophila... TIAL1 0.067 TIA-1 related protein isoform 2 ELAVL4 0.066 ELAV-like 4 isoform 1 ELAVL4 0.066 ELAV-like 4 isoform 5 ELAVL4 0.066 ELAV-like 4 isoform 4 ELAVL4 0.066 ELAV-like 4 isoform 3 ELAVL4 0.066 ELAV-like 4 isoform 2 PUF60 0.065 poly-U binding splicing factor 60KDa isoform c [Hom... PUF60 0.065 poly-U binding splicing factor 60KDa isoform a [Homo... PUF60 0.062 poly-U binding splicing factor 60KDa isoform b [Homo... SYNCRIP 0.055 synaptotagmin binding, cytoplasmic RNA interacting ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.