Guide to the Human Genome
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Name: PABPC1L Sequence: fasta or formatted (614aa) NCBI GI: 185135971
Description:

poly(A)-binding protein, cytoplasmic 1-like

Referenced in:

Polyadenylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         50           3
 C cysteine            1.8         11           2
 D aspartate           3.9         24           3
 E glutamate           6.0         37           2
 F phenylalanine       3.9         24           1
 G glycine             7.0         43           2
 H histidine           3.1         19           1
 I isoleucine          3.7         23           1
 K lysine              5.0         31           1
 L leucine             8.3         51           3
 M methionine          3.7         23           1
 N asparagine          3.7         23           1
 P proline             6.8         42           2
 Q glutamine           5.9         36           2
 R arginine            6.8         42           2
 S serine              7.0         43           2
 T threonine           4.9         30           2
 V valine              6.7         41           2
 W tryptophan          0.3          2           1
 Y tyrosine            3.1         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(A)-binding protein, cytoplasmic 1-like 
PABPC1                0.676   poly(A) binding protein, cytoplasmic 1 
PABPC4                0.639   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.631   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.631   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC3                0.629   poly(A) binding protein, cytoplasmic 3 
PABPC4L               0.382   poly(A) binding protein, cytoplasmic 4-like 
PABPC5                0.340   poly(A) binding protein, cytoplasmic 5 
PABPC1L2B             0.225   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1L2A             0.225   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
ELAVL1                0.081   ELAV-like 1 
ELAVL2                0.079   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL3                0.076   ELAV-like protein 3 isoform 2 
ELAVL4                0.074   ELAV-like 4 isoform 5 
ELAVL4                0.074   ELAV-like 4 isoform 4 
ELAVL4                0.074   ELAV-like 4 isoform 3 
ELAVL4                0.074   ELAV-like 4 isoform 2 
ELAVL3                0.073   ELAV-like protein 3 isoform 1 
SF3B4                 0.070   splicing factor 3b, subunit 4 
TIAL1                 0.067   TIA-1 related protein isoform 1 
ELAVL4                0.066   ELAV-like 4 isoform 1 
TIA1                  0.065   TIA1 protein isoform 1 
LOC100291776          0.064   PREDICTED: similar to poly(A) binding protein, cyto...
TIAL1                 0.063   TIA-1 related protein isoform 2 
TIA1                  0.061   TIA1 protein isoform 2 
NCL                   0.055   nucleolin 
PUF60                 0.054   poly-U binding splicing factor 60KDa isoform c [Hom...
PUF60                 0.054   poly-U binding splicing factor 60KDa isoform a [Homo...
RBMS2                 0.052   RNA binding motif, single stranded interacting protei...
RBMS1                 0.050   RNA binding motif, single stranded interacting protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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