Guide to the Human Genome
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Name: PUF60 Sequence: fasta or formatted (516aa) NCBI GI: 209862867
Description:

poly-U binding splicing factor 60KDa isoform c

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [542aa] poly-U binding splicing factor 60KDa isoform b
alt prot [559aa] poly-U binding splicing factor 60KDa isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         60           5
 C cysteine            0.6          3           1
 D aspartate           4.1         21           3
 E glutamate           7.9         41           4
 F phenylalanine       3.1         16           1
 G glycine             7.2         37           2
 H histidine           1.4          7           1
 I isoleucine          5.6         29           2
 K lysine              5.6         29           2
 L leucine             8.1         42           2
 M methionine          3.7         19           1
 N asparagine          2.3         12           1
 P proline             6.8         35           2
 Q glutamine           6.8         35           4
 R arginine            3.7         19           1
 S serine              6.4         33           2
 T threonine           5.0         26           2
 V valine              7.6         39           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.1         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly-U binding splicing factor 60KDa isoform c [Hom... 
PUF60                 1.000   poly-U binding splicing factor 60KDa isoform a [Homo...
PUF60                 0.955   poly-U binding splicing factor 60KDa isoform b [Homo...
PABPC4                0.083   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.083   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.083   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
RBM39                 0.078   RNA binding motif protein 39 isoform a 
RBM39                 0.078   RNA binding motif protein 39 isoform b 
PABPC1                0.074   poly(A) binding protein, cytoplasmic 1 
PABPC4L               0.072   poly(A) binding protein, cytoplasmic 4-like 
RBM23                 0.071   RNA binding motif protein 23 isoform 3 
RBM23                 0.071   RNA binding motif protein 23 isoform 1 
RBM23                 0.071   RNA binding motif protein 23 isoform 2 
PABPC3                0.070   poly(A) binding protein, cytoplasmic 3 
PABPC1L               0.067   poly(A)-binding protein, cytoplasmic 1-like 
PABPC1L2B             0.064   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1L2A             0.064   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
SF3B4                 0.062   splicing factor 3b, subunit 4 
TIA1                  0.061   TIA1 protein isoform 1 
PABPC5                0.061   poly(A) binding protein, cytoplasmic 5 
TIAL1                 0.059   TIA-1 related protein isoform 1 
TIA1                  0.059   TIA1 protein isoform 2 
TIAL1                 0.054   TIA-1 related protein isoform 2 
BRUNOL4               0.051   bruno-like 4, RNA binding protein isoform 1 
MSI2                  0.051   musashi 2 isoform a 
MSI2                  0.051   musashi 2 isoform b 
BRUNOL4               0.051   bruno-like 4, RNA binding protein isoform 4 
BRUNOL4               0.051   bruno-like 4, RNA binding protein isoform 2 
RBM17                 0.050   RNA binding motif protein 17 
RBM17                 0.050   RNA binding motif protein 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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