PUF60 9671

Name: PUF60	Sequence: fasta or formatted (559aa)		NCBI GI: 17978512
Description: poly-U binding splicing factor 60KDa isoform a		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [542aa] poly-U binding splicing factor 60KDa isoform b alt prot [516aa] poly-U binding splicing factor 60KDa isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.5 70 5 C cysteine 0.5 3 1 D aspartate 4.1 23 3 E glutamate 7.5 42 4 F phenylalanine 2.9 16 1 G glycine 7.7 43 3 H histidine 1.3 7 1 I isoleucine 5.5 31 2 K lysine 5.7 32 2 L leucine 7.7 43 2 M methionine 3.6 20 1 N asparagine 2.3 13 1 P proline 6.8 38 2 Q glutamine 7.0 39 4 R arginine 3.4 19 1 S serine 6.3 35 2 T threonine 5.2 29 2 V valine 7.5 42 2 W tryptophan 0.5 3 1 Y tyrosine 2.0 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly-U binding splicing factor 60KDa isoform a [Homo... PUF60 0.959 poly-U binding splicing factor 60KDa isoform b [Homo... PUF60 0.921 poly-U binding splicing factor 60KDa isoform c [Hom... PABPC4 0.076 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.076 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.076 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... RBM39 0.072 RNA binding motif protein 39 isoform a RBM39 0.072 RNA binding motif protein 39 isoform b PABPC1 0.069 poly(A) binding protein, cytoplasmic 1 PABPC4L 0.067 poly(A) binding protein, cytoplasmic 4-like RBM23 0.066 RNA binding motif protein 23 isoform 3 RBM23 0.066 RNA binding motif protein 23 isoform 1 RBM23 0.066 RNA binding motif protein 23 isoform 2 PABPC3 0.065 poly(A) binding protein, cytoplasmic 3 PABPC1L 0.062 poly(A)-binding protein, cytoplasmic 1-like PABPC1L2B 0.059 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... PABPC1L2A 0.059 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... SF3B4 0.057 splicing factor 3b, subunit 4 TIA1 0.056 TIA1 protein isoform 1 PABPC5 0.056 poly(A) binding protein, cytoplasmic 5 TIAL1 0.054 TIA-1 related protein isoform 1 TIA1 0.054 TIA1 protein isoform 2 TIAL1 0.050 TIA-1 related protein isoform 2 BRUNOL4 0.047 bruno-like 4, RNA binding protein isoform 1 MSI2 0.047 musashi 2 isoform a MSI2 0.047 musashi 2 isoform b BRUNOL4 0.047 bruno-like 4, RNA binding protein isoform 4 BRUNOL4 0.047 bruno-like 4, RNA binding protein isoform 2 RBM17 0.046 RNA binding motif protein 17 RBM17 0.046 RNA binding motif protein 17 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.