PUF60 9576

Name: PUF60	Sequence: fasta or formatted (542aa)		NCBI GI: 17298690
Description: poly-U binding splicing factor 60KDa isoform b		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [559aa] poly-U binding splicing factor 60KDa isoform a alt prot [516aa] poly-U binding splicing factor 60KDa isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.5 68 5 C cysteine 0.6 3 1 D aspartate 4.1 22 3 E glutamate 7.7 42 4 F phenylalanine 2.8 15 1 G glycine 7.6 41 3 H histidine 1.3 7 1 I isoleucine 5.7 31 2 K lysine 5.9 32 2 L leucine 7.6 41 2 M methionine 3.3 18 1 N asparagine 2.4 13 1 P proline 6.6 36 2 Q glutamine 7.0 38 4 R arginine 3.5 19 1 S serine 6.1 33 2 T threonine 5.2 28 2 V valine 7.6 41 2 W tryptophan 0.6 3 1 Y tyrosine 2.0 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 poly-U binding splicing factor 60KDa isoform b [Homo... PUF60 0.990 poly-U binding splicing factor 60KDa isoform a [Homo... PUF60 0.909 poly-U binding splicing factor 60KDa isoform c [Hom... PABPC4 0.075 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.075 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.075 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... RBM39 0.073 RNA binding motif protein 39 isoform a RBM39 0.073 RNA binding motif protein 39 isoform b PABPC1 0.067 poly(A) binding protein, cytoplasmic 1 PABPC4L 0.067 poly(A) binding protein, cytoplasmic 4-like RBM23 0.065 RNA binding motif protein 23 isoform 3 RBM23 0.065 RNA binding motif protein 23 isoform 1 RBM23 0.065 RNA binding motif protein 23 isoform 2 PABPC3 0.065 poly(A) binding protein, cytoplasmic 3 PABPC1L2B 0.061 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... PABPC1L2A 0.061 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... PABPC1L 0.059 poly(A)-binding protein, cytoplasmic 1-like SF3B4 0.059 splicing factor 3b, subunit 4 TIA1 0.058 TIA1 protein isoform 1 TIAL1 0.056 TIA-1 related protein isoform 1 PABPC5 0.056 poly(A) binding protein, cytoplasmic 5 TIA1 0.056 TIA1 protein isoform 2 TIAL1 0.051 TIA-1 related protein isoform 2 BRUNOL4 0.048 bruno-like 4, RNA binding protein isoform 1 MSI2 0.048 musashi 2 isoform a MSI2 0.048 musashi 2 isoform b BRUNOL4 0.048 bruno-like 4, RNA binding protein isoform 4 BRUNOL4 0.048 bruno-like 4, RNA binding protein isoform 2 RBM17 0.048 RNA binding motif protein 17 RBM17 0.048 RNA binding motif protein 17 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.