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Search of human proteins with 4507757
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507757 tyrosinase-related protein 1 precursor [Homo
sapiens]
(537 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507757 tyrosinase-related protein 1 precursor [Homo sapiens] 1131 0.0
gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens] 512 e-145
gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens] 495 e-140
gi|4507753 tyrosinase precursor [Homo sapiens] 407 e-113
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 42 0.001
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] 39 0.012
gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens] 36 0.10
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 35 0.13
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 35 0.13
gi|110347437 latent transforming growth factor beta binding prot... 35 0.17
gi|110347412 latent transforming growth factor beta binding prot... 35 0.17
gi|110347431 latent transforming growth factor beta binding prot... 35 0.17
gi|153946395 tenascin C precursor [Homo sapiens] 34 0.29
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 33 0.50
gi|21264602 laminin alpha 5 [Homo sapiens] 33 0.50
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 33 0.66
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 33 0.66
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 33 0.66
gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens] 33 0.86
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 32 1.1
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 32 1.1
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 32 1.1
gi|122937400 odz, odd Oz/ten-m homolog 3 [Homo sapiens] 32 1.1
gi|61743980 stabilin 2 precursor [Homo sapiens] 32 1.5
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 32 1.9
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 31 2.5
gi|55770876 notch4 preproprotein [Homo sapiens] 31 2.5
gi|24041035 notch 2 preproprotein [Homo sapiens] 30 4.3
gi|74136023 delta-like 1 homolog [Homo sapiens] 30 5.6
gi|24497485 urate anion exchanger 1 isoform a [Homo sapiens] 30 5.6
>gi|4507757 tyrosinase-related protein 1 precursor [Homo sapiens]
Length = 537
Score = 1131 bits (2925), Expect = 0.0
Identities = 537/537 (100%), Positives = 537/537 (100%)
Query: 1 MSAPKLLSLGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSS 60
MSAPKLLSLGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSS
Sbjct: 1 MSAPKLLSLGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSS 60
Query: 61 GRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGA 120
GRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGA
Sbjct: 61 GRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGA 120
Query: 121 ACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFE 180
ACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFE
Sbjct: 121 ACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFE 180
Query: 181 NISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQ 240
NISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQ
Sbjct: 181 NISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQ 240
Query: 241 EPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLG 300
EPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLG
Sbjct: 241 EPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLG 300
Query: 301 TLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVE 360
TLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVE
Sbjct: 301 TLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVE 360
Query: 361 GYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNA 420
GYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNA
Sbjct: 361 GYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNA 420
Query: 421 DISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVPEIIA 480
DISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVPEIIA
Sbjct: 421 DISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVPEIIA 480
Query: 481 IAVVGALLLVALIFGTASYLIRARRSMDEANQPLLTDQYQCYAEEYEKLQNPNQSVV 537
IAVVGALLLVALIFGTASYLIRARRSMDEANQPLLTDQYQCYAEEYEKLQNPNQSVV
Sbjct: 481 IAVVGALLLVALIFGTASYLIRARRSMDEANQPLLTDQYQCYAEEYEKLQNPNQSVV 537
>gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens]
Length = 519
Score = 512 bits (1319), Expect = e-145
Identities = 250/498 (50%), Positives = 329/498 (66%), Gaps = 17/498 (3%)
Query: 6 LLSLGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRC 65
L LGC P A+ QFPR C TV++L + CCP L S + CGS GRG+C
Sbjct: 10 LSCLGCKILP-----GAQGQFPRVCMTVDSLVNKECCPRLGAESA---NVCGSQQGRGQC 61
Query: 66 EAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQR 125
V AD+RP S Y +DDRE+WP +FF+RTC C GNF+G+NCG C+ GW G C+++
Sbjct: 62 TEVRADTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERK 121
Query: 126 VL-IVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISI 184
++R+N+ LS +E+ F+ ALD+AK+ HP +VI T+ +LGP+G PQF N S+
Sbjct: 122 KPPVIRQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGPNGTQPQFANCSV 181
Query: 185 YNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSF 244
Y++FVW HYYSV+ T LG G+ + +DFSH+GPAF+TWHRYHLL LE+D+Q ++ SF
Sbjct: 182 YDFFVWLHYYSVRDTLLGPGRP-YRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESF 240
Query: 245 SLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCN 304
+LPYWNFATG+N CD+CTD L G+ D TLIS NS FS W VCDSL+DY+ L TLCN
Sbjct: 241 ALPYWNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCN 300
Query: 305 STEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSD 364
T +G +RRN G + +LP +D+ CL + FD PPF+ NST SFRN +EG+
Sbjct: 301 GTYEGLLRRNQMGRNS----MKLPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGFDK 356
Query: 365 PTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADIST 424
G D V SLHNL H FLNGT H + NDPIFV+LH+FTDA+FDEW++R+N
Sbjct: 357 ADGTLDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVLHSFTDAIFDEWMKRFNPPADA 416
Query: 425 FPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVP--EIIAIA 482
+P E APIGHNR YNMVPF+PPVTN E+F+T+ D LGY+Y I P P +
Sbjct: 417 WPQELAPIGHNRMYNMVPFFPPVTNEELFLTS-DQLGYSYAIDLPVSVEETPGWPTTLLV 475
Query: 483 VVGALLLVALIFGTASYL 500
V+G L+ + +F ++L
Sbjct: 476 VMGTLVALVGLFVLLAFL 493
>gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens]
Length = 552
Score = 495 bits (1275), Expect = e-140
Identities = 250/531 (47%), Positives = 329/531 (61%), Gaps = 50/531 (9%)
Query: 6 LLSLGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRC 65
L LGC P A+ QFPR C TV++L + CCP L S + CGS GRG+C
Sbjct: 10 LSCLGCKILP-----GAQGQFPRVCMTVDSLVNKECCPRLGAESA---NVCGSQQGRGQC 61
Query: 66 EAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQR 125
V AD+RP S Y +DDRE+WP +FF+RTC C GNF+G+NCG C+ GW G C+++
Sbjct: 62 TEVRADTRPWSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERK 121
Query: 126 VL-IVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISI 184
++R+N+ LS +E+ F+ ALD+AK+ HP +VI T+ +LGP+G PQF N S+
Sbjct: 122 KPPVIRQNIHSLSPQEREQFLGALDLAKKRVHPDYVITTQHWLGLLGPNGTQPQFANCSV 181
Query: 185 YNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSF 244
Y++FVW HYYSV+ T LG G+ + +DFSH+GPAF+TWHRYHLL LE+D+Q ++ SF
Sbjct: 182 YDFFVWLHYYSVRDTLLGPGRP-YRAIDFSHQGPAFVTWHRYHLLCLERDLQRLIGNESF 240
Query: 245 SLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCN 304
+LPYWNFATG+N CD+CTD L G+ D TLIS NS FS W VCDSL+DY+ L TLCN
Sbjct: 241 ALPYWNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFSSWETVCDSLDDYNHLVTLCN 300
Query: 305 STEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSD 364
T +G +RRN G + +LP +D+ CL + FD PPF+ NST SFRN +EG+
Sbjct: 301 GTYEGLLRRNQMGRNS----MKLPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNALEGFDK 356
Query: 365 PTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFV----------------------- 401
G D V SLHNL H FLNGT H + NDPIFV
Sbjct: 357 ADGTLDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVISNRLLYNATTNILEHVRKEKA 416
Query: 402 ----------LLHTFTDAVFDEWLRRYNADISTFPLENAPIGHNRQYNMVPFWPPVTNTE 451
+LH+FTDA+FDEW++R+N +P E APIGHNR YNMVPF+PPVTN E
Sbjct: 417 TKELPSLHVLVLHSFTDAIFDEWMKRFNPPADAWPQELAPIGHNRMYNMVPFFPPVTNEE 476
Query: 452 MFVTAPDNLGYTYEIQWPSREFSVP--EIIAIAVVGALLLVALIFGTASYL 500
+F+T+ D LGY+Y I P P + V+G L+ + +F ++L
Sbjct: 477 LFLTS-DQLGYSYAIDLPVSVEETPGWPTTLLVVMGTLVALVGLFVLLAFL 526
>gi|4507753 tyrosinase precursor [Homo sapiens]
Length = 529
Score = 407 bits (1045), Expect = e-113
Identities = 220/538 (40%), Positives = 311/538 (57%), Gaps = 33/538 (6%)
Query: 9 LGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAV 68
L ++ L FQ + FPR C + + L CCP S P CG SGRG C+ +
Sbjct: 3 LAVLYCLLWSFQTSAGHFPRACVSSKNLMEKECCPPWSGDRSP----CGQLSGRGSCQNI 58
Query: 69 TADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLI 128
+ P PQ+P G DDRE WP F+NRTC C+GNF G NCG C+ G+ G C +R L+
Sbjct: 59 LLSNAPLGPQFPFTGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFWGPNCTERRLL 118
Query: 129 VRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYF 188
VRRN+ DLS EK+ F L +AK T +VI ++ +G+TP F +I+IY+ F
Sbjct: 119 VRRNIFDLSAPEKDKFFAYLTLAKHTISSDYVIPIGTYGQM--KNGSTPMFNDINIYDLF 176
Query: 189 VWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPY 248
VW HYY LG G E + ++DF+HE PAFL WHR LLR E+++Q++ + +F++PY
Sbjct: 177 VWMHYYVSMDALLG-GSEIWRDIDFAHEAPAFLPWHRLFLLRWEQEIQKLTGDENFTIPY 235
Query: 249 WNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCNSTED 308
W++ + CDICTD+ MG + + L+SP S FS W++VC LE+Y++ +LCN T +
Sbjct: 236 WDWRDAEK-CDICTDEYMGGQHPTNPNLLSPASFFSSWQIVCSRLEEYNSHQSLCNGTPE 294
Query: 309 GPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSDP-TG 367
GP+RRNP GN + RLP DV CL + +++ + SFRNT+EG++ P TG
Sbjct: 295 GPLRRNP-GNHDKSRTPRLPSSADVEFCLSLTQYESGSMDKAANFSFRNTLEGFASPLTG 353
Query: 368 KYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTFPL 427
D + S+HN H+++NGT Q S NDPIF+L H F D++F++WLRR+ +P
Sbjct: 354 IADASQSSMHNALHIYMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLQEVYPE 413
Query: 428 ENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVPE---------- 477
NAPIGHNR+ MVPF P N + F+++ D LGY Y S S +
Sbjct: 414 ANAPIGHNRESYMVPFIPLYRNGDFFISSKD-LGYDYSYLQDSDPDSFQDYIKSYLEQAS 472
Query: 478 -----IIAIAVVGALLLVALIFGTASYLIR-ARRSMDEANQPLLTDQYQCYAEEYEKL 529
++ A+VGA +L AL+ G S L R R+ + E QPLL ++ E+Y L
Sbjct: 473 RIWSWLLGAAMVGA-VLTALLAGLVSLLCRHKRKQLPEEKQPLLMEK-----EDYHSL 524
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/111 (28%), Positives = 38/111 (34%), Gaps = 27/111 (24%)
Query: 27 PRQCATVEALR---SGMCCPDLSPVSGPGTDRCGSS-----SGRGRCEAVTADSRPHSPQ 78
P+QC + + S CP L V GP DRC + SG G SR P
Sbjct: 1047 PQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCACHPSRARGPT 1106
Query: 79 YPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCR------PGWRGAACD 123
F CHC F G C C+ PG + ACD
Sbjct: 1107 CNE-------------FTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACD 1144
>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
Length = 1140
Score = 38.9 bits (89), Expect = 0.012
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 99 CHC-NGNFSGHNCGTC--RPGWRGAACDQRVLIVRRNLLDLSK 138
C C N + H GTC PGW+GA CDQ +I+ NL LS+
Sbjct: 802 CDCLNNSTCDHITGTCYCSPGWKGARCDQAGVIIVGNLNSLSR 844
Score = 30.4 bits (67), Expect = 4.3
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 98 TCHC-NGNFSGHNCGTCR--PGWRGAACDQR 125
TC+C NG F G C+ PGW G C QR
Sbjct: 715 TCNCHNGAFCSAYDGECKCTPGWTGLYCTQR 745
Score = 30.0 bits (66), Expect = 5.6
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 96 NRTCHC-NGNFSGHNCGTCR--PGWRGAACD 123
N TC C NG GTC PGWRG C+
Sbjct: 496 NLTCQCLNGGACNTLDGTCTCAPGWRGEKCE 526
Score = 29.6 bits (65), Expect = 7.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 99 CHCNGNFSGHNCG-TCRPGWRGAACDQ 124
C C +SG C TC PG+ G AC Q
Sbjct: 385 CACKPGWSGLYCNETCSPGFYGEACQQ 411
>gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens]
Length = 2769
Score = 35.8 bits (81), Expect = 0.10
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 19/46 (41%)
Query: 99 CHCNGNFSGHNC-----------------GTCR--PGWRGAACDQR 125
C C+ +++GH+C GTCR GW GAACDQR
Sbjct: 713 CSCDPSWTGHDCSIEICAADCGGHGVCVGGTCRCEDGWMGAACDQR 758
Score = 30.8 bits (68), Expect = 3.3
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 19/45 (42%)
Query: 98 TCHCNGNFSGHNCGT-------------------CRPGWRGAACD 123
TCHC F G +CG C GW+GA CD
Sbjct: 580 TCHCFLGFLGPDCGRASCPVLCSGNGQYMKGRCLCHSGWKGAECD 624
Score = 30.4 bits (67), Expect = 4.3
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
Query: 101 CNGN------FSGHNCGTCRPGWRGAACD 123
CNGN +G +C C+ GWRGA CD
Sbjct: 804 CNGNGRCTLDLNGWHC-VCQLGWRGAGCD 831
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 35.4 bits (80), Expect = 0.13
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 62 RGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCH-----CNGN----FSGHNCGT 112
RGRC V P Y G+ RE P F+ C C G + C T
Sbjct: 248 RGRCHPVDGTCACE-PGYR--GKYCREPCPAGFYGLGCRRRCGQCKGQQPCTVAEGRCLT 304
Query: 113 CRPGWRGAACDQ 124
C PGW G CDQ
Sbjct: 305 CEPGWNGTKCDQ 316
Score = 30.8 bits (68), Expect = 3.3
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 50 GPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHN 109
GP S G+CE VT H+ + W R C C
Sbjct: 119 GPDCKELCSCHPHGQCEDVTGQCTCHARR-----------WGARC-EHACQCQHGTCHPR 166
Query: 110 CGTCR--PGWRGAAC 122
G CR PGW GA C
Sbjct: 167 SGACRCEPGWWGAQC 181
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 35.4 bits (80), Expect = 0.13
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 62 RGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCH-----CNGN----FSGHNCGT 112
RGRC V P Y G+ RE P F+ C C G + C T
Sbjct: 248 RGRCHPVDGTCACE-PGYR--GKYCREPCPAGFYGLGCRRRCGQCKGQQPCTVAEGRCLT 304
Query: 113 CRPGWRGAACDQ 124
C PGW G CDQ
Sbjct: 305 CEPGWNGTKCDQ 316
Score = 30.8 bits (68), Expect = 3.3
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 50 GPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHN 109
GP S G+CE VT H+ + W R C C
Sbjct: 119 GPDCKELCSCHPHGQCEDVTGQCTCHARR-----------WGARC-EHACQCQHGTCHPR 166
Query: 110 CGTCR--PGWRGAAC 122
G CR PGW GA C
Sbjct: 167 SGACRCEPGWWGAQC 181
>gi|110347437 latent transforming growth factor beta binding protein
4 isoform c [Homo sapiens]
Length = 1557
Score = 35.0 bits (79), Expect = 0.17
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 29 QCATVEALRSGMCCPDLSPVSGPGTDRC-----GSSSGRGRCEAVTADSRPHSPQYPHDG 83
+C V+ + + CP V+ PG+ +C G RGRC V S P PH
Sbjct: 724 ECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSSGAPPCGPHG- 782
Query: 84 RDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWR 118
HC C +C PG+R
Sbjct: 783 ----------------HCTNTEGSFRC-SCAPGYR 800
>gi|110347412 latent transforming growth factor beta binding protein
4 isoform b [Homo sapiens]
Length = 1587
Score = 35.0 bits (79), Expect = 0.17
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 29 QCATVEALRSGMCCPDLSPVSGPGTDRC-----GSSSGRGRCEAVTADSRPHSPQYPHDG 83
+C V+ + + CP V+ PG+ +C G RGRC V S P PH
Sbjct: 754 ECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSSGAPPCGPHG- 812
Query: 84 RDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWR 118
HC C +C PG+R
Sbjct: 813 ----------------HCTNTEGSFRC-SCAPGYR 830
>gi|110347431 latent transforming growth factor beta binding protein
4 isoform a [Homo sapiens]
Length = 1624
Score = 35.0 bits (79), Expect = 0.17
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 29 QCATVEALRSGMCCPDLSPVSGPGTDRC-----GSSSGRGRCEAVTADSRPHSPQYPHDG 83
+C V+ + + CP V+ PG+ +C G RGRC V S P PH
Sbjct: 791 ECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSSGAPPCGPHG- 849
Query: 84 RDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWR 118
HC C +C PG+R
Sbjct: 850 ----------------HCTNTEGSFRC-SCAPGYR 867
>gi|153946395 tenascin C precursor [Homo sapiens]
Length = 2201
Score = 34.3 bits (77), Expect = 0.29
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 99 CHCNGNFSGHNCG-TCRPGWRGAACDQ 124
C GNFS CG C PGW+G C +
Sbjct: 161 CSGRGNFSTEGCGCVCEPGWKGPNCSE 187
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 33.5 bits (75), Expect = 0.50
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 91 PLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQ 124
P F+RTC G G+ C C PG+ G C+Q
Sbjct: 1620 PENMFSRTCESLGA-GGYRCTACEPGYTGQYCEQ 1652
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 33.5 bits (75), Expect = 0.50
Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 41 CCPDLSPVSGPGTDRCGSSSGRGRC----EAVTADSRP----HSPQYPHDGRDDREVWPL 92
C P G DRC +G+ RC E T D H P G P
Sbjct: 538 CQPCQCSSPGVADDRCDPDTGQCRCRVGFEGATCDRCAPGYFHFPLCQLCGCSPAGTLPE 597
Query: 93 RFFNR-TCHCNGNFSGHNCGTCRPGWRG------AACDQR 125
C C F+G +C CRPG+ G CD R
Sbjct: 598 GCDEAGRCLCQPEFAGPHCDRCRPGYHGFPNCQACTCDPR 637
Score = 32.7 bits (73), Expect = 0.86
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 17/81 (20%)
Query: 40 MCCPDLSPVSGPGTDRCGSS-SGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRT 98
+C P+ + GP DRC G C+A T D R Q G
Sbjct: 606 LCQPEFA---GPHCDRCRPGYHGFPNCQACTCDPRGALDQLCGAGG-------------L 649
Query: 99 CHCNGNFSGHNCGTCRPGWRG 119
C C ++G C C PG+ G
Sbjct: 650 CRCRPGYTGTACQECSPGFHG 670
Score = 31.6 bits (70), Expect = 1.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 99 CHCNGNFSGHNCGTCRPGWRGAAC 122
C C NF G +C C PG+ G C
Sbjct: 515 CLCKPNFQGTHCELCAPGFYGPGC 538
Score = 30.8 bits (68), Expect = 3.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 99 CHCNGNFSGHNCGTCRPGWRG 119
C C N +G C TC PG+ G
Sbjct: 1550 CKCRPNVTGRRCDTCSPGFHG 1570
Score = 30.4 bits (67), Expect = 4.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 99 CHCNGNFSGHNCGTCRPGWRG 119
C+C NFSG C C G+ G
Sbjct: 447 CYCRPNFSGERCDVCAEGFTG 467
Score = 29.6 bits (65), Expect = 7.3
Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 22/101 (21%)
Query: 35 ALRSGMCCP-DLSPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDD------- 86
AL G C D +P GT+ C SG C+A R Q H G D
Sbjct: 2014 ALLPGNCTRCDCTPC---GTEACDPHSGHCLCKAGVTGRRCDRCQEGHFGFDGCGGCRPC 2070
Query: 87 --------REVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRG 119
E P + CHC G C C PG+ G
Sbjct: 2071 ACGPAAEGSECHPQ---SGQCHCRPGTMGPQCRECAPGYWG 2108
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 33.1 bits (74), Expect = 0.66
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 22 ARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCG----SSSGRGRCEAVTADSRPHSP 77
AR +FP C G C P G C SS+ R C+ TA +R
Sbjct: 127 ARCEFPCACGP-----HGRCDP------ATGVCHCEPGWWSSTCRRPCQCNTAAARCEQA 175
Query: 78 QYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCG--TCRPGWRGAACDQRVLIVR 130
+ W R + C+C+G+ + G CRPGW G C Q+ VR
Sbjct: 176 T---GACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCACRPGWWGPECQQQCECVR 227
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 33.1 bits (74), Expect = 0.66
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 22 ARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCG----SSSGRGRCEAVTADSRPHSP 77
AR +FP C G C P G C SS+ R C+ TA +R
Sbjct: 127 ARCEFPCACGP-----HGRCDP------ATGVCHCEPGWWSSTCRRPCQCNTAAARCEQA 175
Query: 78 QYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCG--TCRPGWRGAACDQRVLIVR 130
+ W R + C+C+G+ + G CRPGW G C Q+ VR
Sbjct: 176 T---GACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCACRPGWWGPECQQQCECVR 227
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 33.1 bits (74), Expect = 0.66
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 22 ARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCG----SSSGRGRCEAVTADSRPHSP 77
AR +FP C G C P G C SS+ R C+ TA +R
Sbjct: 127 ARCEFPCACGP-----HGRCDP------ATGVCHCEPGWWSSTCRRPCQCNTAAARCEQA 175
Query: 78 QYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCG--TCRPGWRGAACDQRVLIVR 130
+ W R + C+C+G+ + G CRPGW G C Q+ VR
Sbjct: 176 T---GACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCACRPGWWGPECQQQCECVR 227
>gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens]
Length = 2765
Score = 32.7 bits (73), Expect = 0.86
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 19/47 (40%)
Query: 99 CHCNGNFSGHNCGT-------------------CRPGWRGAACDQRV 126
C C+ N+ G +C C GW GAACDQRV
Sbjct: 723 CSCDPNWMGPDCSVEVCSVDCGTHGVCIGGACRCEEGWTGAACDQRV 769
Score = 29.6 bits (65), Expect = 7.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 99 CHCNGNFSGHNCGTCRPGWRGAACD 123
C NG +S C C GW+GA CD
Sbjct: 611 CSGNGQYSKGTC-QCYSGWKGAECD 634
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 99 CHCNGNFSGHNCGTCRPGWRG 119
C CN N++G NC C PG+ G
Sbjct: 155 CICNENYAGPNCERCAPGYYG 175
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 99 CHCNGNFSGHNCGTCRPGWRG 119
C CN N++G NC C PG+ G
Sbjct: 155 CICNENYAGPNCERCAPGYYG 175
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 99 CHCNGNFSGHNCGTCRPGWRG 119
C CN N++G NC C PG+ G
Sbjct: 155 CICNENYAGPNCERCAPGYYG 175
>gi|122937400 odz, odd Oz/ten-m homolog 3 [Homo sapiens]
Length = 2699
Score = 32.3 bits (72), Expect = 1.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 96 NRTCHCNGNFSGHNCGTCRPGWRGAACD 123
N C + +G +C C+PGWRGA CD
Sbjct: 748 NSNGRCTLDQNGWHC-VCQPGWRGAGCD 774
Score = 30.0 bits (66), Expect = 5.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 19/47 (40%)
Query: 98 TCHCNGNFSGHNC-----------------GTCR--PGWRGAACDQR 125
+C C+ N++G +C GTCR GW G AC+QR
Sbjct: 664 SCTCDPNWTGPDCSNEICSVDCGSHGVCMGGTCRCEEGWTGPACNQR 710
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 32.0 bits (71), Expect = 1.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 99 CHCNGNFSGHNCGTCRPGWRGAACDQ 124
C C FSG C TC G G CDQ
Sbjct: 1372 CECGEGFSGTACETCTEGKYGIHCDQ 1397
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 31.6 bits (70), Expect = 1.9
Identities = 36/131 (27%), Positives = 40/131 (30%), Gaps = 41/131 (31%)
Query: 27 PRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSS------GRGRCEAVTADSRPH----- 75
PR C G C D +G D CG S RGRCE P
Sbjct: 374 PRDCRGRGRCEDGECICD----TGYSGDDCGVRSCPGDCNQRGRCEDGRCVCWPGYTGTD 429
Query: 76 --SPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGT-------------------CR 114
S P D R R N C CN +SG +CG C
Sbjct: 430 CGSRACPRDCRGRG-----RCENGVCVCNAGYSGEDCGVRSCPGDCRGRGRCESGRCMCW 484
Query: 115 PGWRGAACDQR 125
PG+ G C R
Sbjct: 485 PGYTGRDCGTR 495
Score = 30.0 bits (66), Expect = 5.6
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 27 PRQCATVEALRSGMCCPDLSPVSGP--GTDRC-GSSSGRGRCEAVTADSRPHSPQYPHDG 83
PR C +G+C + SG G C G GRGRCE+ P + G
Sbjct: 436 PRDCRGRGRCENGVCVCNAG-YSGEDCGVRSCPGDCRGRGRCESGRCMCWPG-----YTG 489
Query: 84 RD-DREVWPL------RFFNRTCHCNGNFSGHNCGTCR-PG 116
RD P R + C CN F+G +CG+ R PG
Sbjct: 490 RDCGTRACPGDCRGRGRCVDGRCVCNPGFTGEDCGSRRCPG 530
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 31.2 bits (69), Expect = 2.5
Identities = 21/68 (30%), Positives = 25/68 (36%)
Query: 31 ATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVW 90
A E L P + GP GS+SG G A S+PH Q E+
Sbjct: 298 AVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEME 357
Query: 91 PLRFFNRT 98
LR N T
Sbjct: 358 KLREENET 365
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 31.2 bits (69), Expect = 2.5
Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 28/112 (25%)
Query: 25 QFPRQCATVEALRSGMCCPDL-----------SPVSGPGTDRCGSSSGRGRCEAVTADSR 73
QFP C + ++G C L SP++ C RC+A D
Sbjct: 63 QFPDPCQNAQLCQNGGSCQALLPAPLGLPSSPSPLTPSFLCTCLPGFTGERCQAKLEDPC 122
Query: 74 PHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQR 125
P S F ++ C+ SG +C PGW G C R
Sbjct: 123 PPS-----------------FCSKRGRCHIQASGRPQCSCMPGWTGEQCQLR 157
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 30.4 bits (67), Expect = 4.3
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 29 QCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDRE 88
+CA+ L G C D+S T C C+ V A P+ +
Sbjct: 798 ECASNPCLNQGTCFDDISGY----TCHCVLPYTGKNCQTVLAPCSPNPCENA-------- 845
Query: 89 VWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAAC 122
C + NF + C C PGW+G C
Sbjct: 846 --------AVCKESPNFESYTC-LCAPGWQGQRC 870
>gi|74136023 delta-like 1 homolog [Homo sapiens]
Length = 383
Score = 30.0 bits (66), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 102 NGNFSGHNCGTCRPGWRGAACDQRV 126
NG N C+PGW+G CDQ V
Sbjct: 34 NGFCEDDNVCRCQPGWQGPLCDQCV 58
>gi|24497485 urate anion exchanger 1 isoform a [Homo sapiens]
Length = 553
Score = 30.0 bits (66), Expect = 5.6
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 225 RYHLLRLEKDMQEMLQEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFS 284
R H R + Q L +P+ + W+ A + C D + RS F ST+++
Sbjct: 84 RPHQCRRFRQPQWQLLDPNATATSWSEAD----TEPCVDGWVYDRSIFTSTIVA------ 133
Query: 285 QWRVVCDS 292
+W +VCDS
Sbjct: 134 KWNLVCDS 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,905,320
Number of Sequences: 37866
Number of extensions: 1112816
Number of successful extensions: 2969
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2730
Number of HSP's gapped (non-prelim): 261
length of query: 537
length of database: 18,247,518
effective HSP length: 107
effective length of query: 430
effective length of database: 14,195,856
effective search space: 6104218080
effective search space used: 6104218080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.