Search of human proteins with 4507755

Search of human proteins with 4507755

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507755 TYRO protein tyrosine kinase binding protein isoform
1 precursor [Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507755 TYRO protein tyrosine kinase binding protein isoform ...   223   3e-59
gi|38158005 TYRO protein tyrosine kinase binding protein isoform...   216   2e-57
gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo ...    42   1e-04
gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens]    34   0.029
gi|241896926 protein tyrosine phosphatase, receptor type, H isof...    33   0.049
gi|241896924 protein tyrosine phosphatase, receptor type, H isof...    33   0.049
gi|15826850 hematopoietic cell signal transducer isoform 1 precu...    31   0.19 
gi|56117854 hematopoietic cell signal transducer isoform 2 precu...    30   0.32 
gi|25777643 potassium intermediate/small conductance calcium-act...    30   0.41 
gi|68161541 carcinoembryonic antigen-related cell adhesion molec...    30   0.54 
gi|19923195 carcinoembryonic antigen-related cell adhesion molec...    30   0.54 
gi|169165721 PREDICTED: similar to hCG1811563 [Homo sapiens]           27   2.7  
gi|169162264 PREDICTED: similar to hCG1996527 [Homo sapiens]           27   2.7  
gi|113415341 PREDICTED: similar to hCG1811563 [Homo sapiens]           27   2.7  
gi|239747467 PREDICTED: similar to hCG1996527 [Homo sapiens]           27   2.7  
gi|239741341 PREDICTED: similar to hCG1996527 [Homo sapiens]           27   2.7  
gi|17136078 VGF nerve growth factor inducible precursor [Homo sa...    27   2.7  
gi|23397642 GREB1 protein isoform a [Homo sapiens]                     27   3.5  
gi|30795252 autophagy-related cysteine endopeptidase 2 isoform a...    27   3.5  
gi|32698864 hypothetical protein LOC149466 [Homo sapiens]              27   3.5  
gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens]       27   4.6  
gi|145699105 connexin40.1 [Homo sapiens]                               27   4.6  
gi|71143132 carcinoembryonic antigen-related cell adhesion molec...    27   4.6  
gi|5453613 CD7 antigen precursor [Homo sapiens]                        26   6.0  
gi|121114300 carcinoembryonic antigen-related cell adhesion mole...    26   6.0  
gi|13540590 family with sequence similarity 117, member A [Homo ...    26   6.0  
gi|157384986 transducin-like enhancer protein 3 isoform b [Homo ...    26   6.0  
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ...    26   7.8  
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [...    26   7.8  
gi|169214048 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  

>gi|4507755 TYRO protein tyrosine kinase binding protein isoform 1
           precursor [Homo sapiens]
          Length = 113

 Score =  223 bits (567), Expect = 3e-59
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA 60
           MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
Sbjct: 1   MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA 60

Query: 61  VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 113
           VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
Sbjct: 61  VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 113


>gi|38158005 TYRO protein tyrosine kinase binding protein isoform 2
           precursor [Homo sapiens]
          Length = 112

 Score =  216 bits (551), Expect = 2e-57
 Identities = 112/113 (99%), Positives = 112/113 (99%), Gaps = 1/113 (0%)

Query: 1   MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA 60
           MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA
Sbjct: 1   MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA 60

Query: 61  VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 113
           VYFLGRLVPRGRGAAE ATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK
Sbjct: 61  VYFLGRLVPRGRGAAE-ATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 112


>gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo
           sapiens]
          Length = 171

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 25  VQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVY-FLGRLVPRGRGAAEAATRKQR 83
           VQ   +   SC  + P  +AGI++ D++ T+L+AL V+ F G    R  GAA+     Q 
Sbjct: 86  VQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVFCFAGHETGRLSGAADT----QA 141

Query: 84  ITETESPYQELQGQRSDVYSDL 105
           +   +  YQ L+ +    YS L
Sbjct: 142 LLRNDQVYQPLRDRDDAQYSHL 163


>gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens]
          Length = 182

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 23  RPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFLGRLVPRGRGAAEAATRKQ 82
           +P+Q   +   +C  ++   ++G +  ++V   ++A+ VYF   +  +       A+ KQ
Sbjct: 95  KPLQVYYRMCQNCIELNAATISGFLFAEIVSIFVLAVGVYF---IAGQDGVRQSRASDKQ 151

Query: 83  RITETESPYQELQGQRSDVYSDL 105
            +   +  YQ L+ +  D YS L
Sbjct: 152 TLLPNDQLYQPLKDREDDQYSHL 174


>gi|241896926 protein tyrosine phosphatase, receptor type, H isoform
           2 precursor [Homo sapiens]
          Length = 937

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 35  CSTVSPGVLAGIVMGDLVLTVLIALAVYFLGR 66
           C T S GV+AG  +G L+  +L+ L ++FL R
Sbjct: 569 CHTESAGVIAGAFVGILLFLILVGLLIFFLKR 600


>gi|241896924 protein tyrosine phosphatase, receptor type, H isoform
           1 precursor [Homo sapiens]
          Length = 1115

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 35  CSTVSPGVLAGIVMGDLVLTVLIALAVYFLGR 66
           C T S GV+AG  +G L+  +L+ L ++FL R
Sbjct: 747 CHTESAGVIAGAFVGILLFLILVGLLIFFLKR 778


>gi|15826850 hematopoietic cell signal transducer isoform 1
          precursor [Homo sapiens]
          Length = 93

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 10 LLLLPLLLAV------SGLRPVQAQAQSDCS-CSTVSPGVLAGIVMGDLVLTVLIALAVY 62
          LLLLP+  A       S L          CS C ++S  +LAG+V  D V ++LI  AV+
Sbjct: 10 LLLLPVAAAQTTPGERSSLPAFYPGTSGSCSGCGSLSLPLLAGLVAADAVASLLIVGAVF 69

Query: 63 FLGRLVPRGRGAAE 76
             R  PR   A E
Sbjct: 70 LCAR--PRRSPAQE 81


>gi|56117854 hematopoietic cell signal transducer isoform 2
          precursor [Homo sapiens]
          Length = 92

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 10 LLLLPLLLAV------SGLRPVQAQAQSDCS-CSTVSPGVLAGIVMGDLVLTVLIALAVY 62
          LLLLP+  A       S L          CS C ++S  +LAG+V  D V ++LI  AV+
Sbjct: 10 LLLLPVAAAQTTPGERSSLPAFYPGTSGSCSGCGSLSLPLLAGLVAADAVASLLIVGAVF 69

Query: 63 FLGR 66
             R
Sbjct: 70 LCAR 73


>gi|25777643 potassium intermediate/small conductance
           calcium-activated channel, subfamily N, member 1 [Homo
           sapiens]
          Length = 543

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 7   CSRLLLLPLLLAVSGLRPVQAQAQSDCSCS---TVSPGVLAGIVMGDLVLTVLIALAVYF 63
           C R+ L+ L LAV  + PV    +   +     T +P V    V  D++L++ + L +Y 
Sbjct: 183 CERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSVAEADV--DVLLSIPMFLRLYL 240

Query: 64  LGRLV 68
           LGR++
Sbjct: 241 LGRVM 245


>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
           1 isoform 2 precursor [Homo sapiens]
          Length = 464

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 38  VSPGVLAGIVMGDLVLTVLIALAV 61
           +SPG +AGIV+G + L  LIA+A+
Sbjct: 425 LSPGAIAGIVIGVVALVALIAVAL 448


>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
           1 isoform 1 precursor [Homo sapiens]
          Length = 526

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 38  VSPGVLAGIVMGDLVLTVLIALAV 61
           +SPG +AGIV+G + L  LIA+A+
Sbjct: 425 LSPGAIAGIVIGVVALVALIAVAL 448


>gi|169165721 PREDICTED: similar to hCG1811563 [Homo sapiens]
          Length = 322

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 17/97 (17%)

Query: 13  LPLLLAVSGLRPVQAQAQSDCSCST------VSPGVLAGIVMGDLVLTVLIALAVYFLGR 66
           L +L  VS L P++ + Q +C  ST       S     GI MG      L       L R
Sbjct: 34  LHILAFVSCLSPLECKLQRNCIRSTWLRRPRASRHTRTGICMGAQKFQDLT------LER 87

Query: 67  LVPRGRGA-----AEAATRKQRITETESPYQELQGQR 98
             P G        A A ++++R+   + P  +LQGQR
Sbjct: 88  PGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQR 124


>gi|169162264 PREDICTED: similar to hCG1996527 [Homo sapiens]
          Length = 654

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 25  VQAQAQSDCSC----STVSPGVLAGIVMGDLVLTVLIALAVYFLG 65
           V  ++++ CSC    S+  PGV+ GI +G  +  ++I L   FLG
Sbjct: 608 VSTESKTGCSCSQGESSPLPGVVVGIHVG--LAALIICLLCLFLG 650


>gi|113415341 PREDICTED: similar to hCG1811563 [Homo sapiens]
          Length = 322

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 17/97 (17%)

Query: 13  LPLLLAVSGLRPVQAQAQSDCSCST------VSPGVLAGIVMGDLVLTVLIALAVYFLGR 66
           L +L  VS L P++ + Q +C  ST       S     GI MG      L       L R
Sbjct: 34  LHILAFVSCLSPLECKLQRNCIRSTWLRRPRASRHTRTGICMGAQKFQDLT------LER 87

Query: 67  LVPRGRGA-----AEAATRKQRITETESPYQELQGQR 98
             P G        A A ++++R+   + P  +LQGQR
Sbjct: 88  PGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQR 124


>gi|239747467 PREDICTED: similar to hCG1996527 [Homo sapiens]
          Length = 654

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 25  VQAQAQSDCSC----STVSPGVLAGIVMGDLVLTVLIALAVYFLG 65
           V  ++++ CSC    S+  PGV+ GI +G  +  ++I L   FLG
Sbjct: 608 VSTESKTGCSCSQGESSPLPGVVVGIHVG--LAALIICLLCLFLG 650


>gi|239741341 PREDICTED: similar to hCG1996527 [Homo sapiens]
          Length = 654

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 25  VQAQAQSDCSC----STVSPGVLAGIVMGDLVLTVLIALAVYFLG 65
           V  ++++ CSC    S+  PGV+ GI +G  +  ++I L   FLG
Sbjct: 608 VSTESKTGCSCSQGESSPLPGVVVGIHVG--LAALIICLLCLFLG 650


>gi|17136078 VGF nerve growth factor inducible precursor [Homo
           sapiens]
          Length = 615

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 1   MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA 60
           +GG E   RLL   L    +G R  +A  Q+      ++       +  DL+L  L+   
Sbjct: 287 LGGSEAGERLLQQGLAQVEAGRRQAEATRQAAAQEERLAD------LASDLLLQYLLQGG 340

Query: 61  VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQG 96
               G     GRG  EAA  ++   E E   QE +G
Sbjct: 341 ARQRGL---GGRGLQEAAEERESAREEEEAEQERRG 373


>gi|23397642 GREB1 protein isoform a [Homo sapiens]
          Length = 1949

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 51   LVLTVL---IALAVYFLGRLVPRGRGAAEAATRK--QRITETESPYQEL--QGQRSDVYS 103
            LV T L   + LA YF+   VP  +GA   A     ++++ T++  +EL  +G  S+  S
Sbjct: 1056 LVRTALEQELGLAAYFVSNEVPLEKGARNEALESDAEKLSSTDNEDEELGTEGSTSEKRS 1115

Query: 104  DLNTQR 109
             +  +R
Sbjct: 1116 PMKRER 1121


>gi|30795252 autophagy-related cysteine endopeptidase 2 isoform a
           [Homo sapiens]
          Length = 398

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 10  LLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAG 45
           LL++PL L ++ + PV   A  +C     S G L G
Sbjct: 224 LLIVPLRLGINQINPVYVDAFKECFKMPQSLGALGG 259


>gi|32698864 hypothetical protein LOC149466 [Homo sapiens]
          Length = 113

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 9/36 (25%)

Query: 34 SCSTVSPG---------VLAGIVMGDLVLTVLIALA 60
          + S V+PG         VL G V+G +VL++LIALA
Sbjct: 16 TASAVAPGPGTGARAWPVLVGFVLGAVVLSLLIALA 51


>gi|45269149 quinolinate phosphoribosyltransferase [Homo sapiens]
          Length = 297

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 19 VSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVYFL---GRLVPRGRGA 74
          VSG  P QA   +       SPGVLAG    D + T L     +FL    +LVP  R A
Sbjct: 36 VSGAGPSQAALWAK------SPGVLAGQPFFDAIFTQLNCQVSWFLPEGSKLVPVARVA 88


>gi|145699105 connexin40.1 [Homo sapiens]
          Length = 370

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 23/102 (22%)

Query: 11  LLLPLLLAVSGLRPVQAQAQSDCSCSTVSPG--------------VLAGIVMGDLVLTVL 56
           +LL +L+ V   RPV    Q    C+T+ PG              +   ++ G  VL   
Sbjct: 30  MLLRMLVIVLAGRPVYQDEQERFVCNTLQPGCANVCYDVFSPVSHLRFWLIQGVCVLLPS 89

Query: 57  IALAVYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQR 98
              +VY L       RGA  AA   +R  +   P +   GQR
Sbjct: 90  AVFSVYVL------HRGATLAALGPRRCPD---PREPASGQR 122


>gi|71143132 carcinoembryonic antigen-related cell adhesion molecule
           4 [Homo sapiens]
          Length = 244

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 41  GVLAGIVMGDLVLTVLIALAVYFLGRLVPRGRGAAEAATRKQ 82
           G +AGIV G LV   L+A  V FL  L   GR + +   R+Q
Sbjct: 151 GAVAGIVTGVLVGVALVAALVCFL-LLSRTGRASIQRDLREQ 191


>gi|5453613 CD7 antigen precursor [Homo sapiens]
          Length = 240

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 9  RLLLLPLLLAVSGLRP---VQAQAQSDCSCSTVSPGVLAGI 46
          RLLLLPLLLA++   P      + Q    C+TV  G    I
Sbjct: 6  RLLLLPLLLALARGLPGALAAQEVQQSPHCTTVPVGASVNI 46


>gi|121114300 carcinoembryonic antigen-related cell adhesion
           molecule 3 precursor [Homo sapiens]
          Length = 252

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 41  GVLAGIVMGDLVLTVLIALAVYFLGRLVPRGRGAAEAATRKQR 83
           G +AGIV G LV   L+A  V FL  L   GR + +   ++Q+
Sbjct: 151 GAVAGIVTGVLVGVALVAALVCFL-LLAKTGRTSIQRDLKEQQ 192


>gi|13540590 family with sequence similarity 117, member A [Homo
           sapiens]
          Length = 453

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 59  LAVYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRS 99
           L+ Y LG+  PR    A       + T+T   +QEL+G+R+
Sbjct: 96  LSSYLLGQW-PRDADGAFTCCTNDKATQTPLSWQELEGERA 135


>gi|157384986 transducin-like enhancer protein 3 isoform b [Homo
           sapiens]
          Length = 769

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 3   GLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGI 46
           G++P +  L  P+ +  S   P    +  + + S  SPG  AG+
Sbjct: 346 GMDPIASALRTPISITSSYAAPFAMMSHHEMNGSLTSPGAYAGL 389


>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
           [Homo sapiens]
          Length = 173

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 11  LLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVY------FL 64
           ++L  L A+SG+           + S +S    AGI+     L V++ALA+Y      FL
Sbjct: 68  MILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFL 127

Query: 65  GR 66
           GR
Sbjct: 128 GR 129


>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
           [Homo sapiens]
          Length = 215

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 11  LLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALAVY------FL 64
           ++L  L A+SG+           + S +S    AGI+     L V++ALA+Y      FL
Sbjct: 110 MILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFL 169

Query: 65  GR 66
           GR
Sbjct: 170 GR 171


>gi|169214048 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 881

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 12  LLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDL----VLTVLIALAVYFLGR 66
           +LP+L    G     +Q++   +  T+S G +AGIV+G L    +L VL+ L +  L R
Sbjct: 749 ILPIL---GGQPGTPSQSRVYRAGPTLSHGAIAGIVLGSLLGLALLAVLLLLCICCLCR 804


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,908,618
Number of Sequences: 37866
Number of extensions: 139088
Number of successful extensions: 565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 34
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.