ATG4A 25330

Name: ATG4A	Sequence: fasta or formatted (398aa)		NCBI GI: 30795252
Description: autophagy-related cysteine endopeptidase 2 isoform a		Referenced in: Additional Membrane Functions
Other entries for this name: alt prot [336aa] autophagy-related cysteine endopeptidase 2 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 19 1 C cysteine 3.0 12 2 D aspartate 6.5 26 1 E glutamate 7.5 30 2 F phenylalanine 5.3 21 2 G glycine 6.0 24 2 H histidine 1.8 7 1 I isoleucine 5.0 20 1 K lysine 6.5 26 2 L leucine 10.8 43 3 M methionine 2.8 11 2 N asparagine 3.5 14 2 P proline 5.5 22 2 Q glutamine 5.3 21 1 R arginine 3.3 13 2 S serine 6.5 26 2 T threonine 5.3 21 3 V valine 5.3 21 2 W tryptophan 2.5 10 1 Y tyrosine 2.8 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 autophagy-related cysteine endopeptidase 2 isoform a... ATG4A 0.667 autophagy-related cysteine endopeptidase 2 isoform b... ATG4B 0.516 APG4 autophagy 4 homolog B isoform a ATG4B 0.504 APG4 autophagy 4 homolog B isoform b ATG4D 0.214 APG4 autophagy 4 homolog D ATG4C 0.193 APG4 autophagy 4 homolog C isoform 8 ATG4C 0.193 APG4 autophagy 4 homolog C isoform 7 SRCAP 0.009 Snf2-related CBP activator protein NFKBIL1 0.005 nuclear factor of kappa light polypeptide gene enha... NFKBIL1 0.005 nuclear factor of kappa light polypeptide gene enha... NFKBIL1 0.005 nuclear factor of kappa light polypeptide gene enha... NFKBIL1 0.005 nuclear factor of kappa light polypeptide gene enha... LYST 0.005 lysosomal trafficking regulator Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.