Guide to the Human Genome
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Name: LOC730109 Sequence: fasta or formatted (322aa) NCBI GI: 113415341
Description:

PREDICTED: similar to hCG1811563

Not currently referenced in the text

Other entries for this name:
alt prot {322aa} PREDICTED: similar to hCG1811563
alt mRNA {322aa} PREDICTED: similar to hCG1811563
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         27           2
 C cysteine            5.3         17           1
 D aspartate           3.7         12           1
 E glutamate           4.3         14           2
 F phenylalanine       1.9          6           1
 G glycine             9.6         31           2
 H histidine           3.1         10           1
 I isoleucine          2.2          7           1
 K lysine              1.6          5           1
 L leucine            12.4         40           2
 M methionine          2.2          7           1
 N asparagine          1.9          6           1
 P proline             8.7         28           2
 Q glutamine           4.3         14           1
 R arginine           10.9         35           2
 S serine              7.1         23           2
 T threonine           5.6         18           2
 V valine              4.3         14           1
 W tryptophan          2.2          7           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1811563 
LOC730109             1.000   PREDICTED: similar to hCG1811563 
LOC730109             0.989   PREDICTED: similar to hCG1811563 
PLEKHN1               0.009   pleckstrin homology domain containing, family N mem...
PLEKHN1               0.009   pleckstrin homology domain containing, family N mem...
KIAA1522              0.009   hypothetical protein LOC57648 
TFAP4                 0.008   transcription factor AP-4 (activating enhancer bindin...
GABBR1                0.008   gamma-aminobutyric acid (GABA) B receptor 1 isoform...
GABBR1                0.008   gamma-aminobutyric acid (GABA) B receptor 1 isoform ...
GABBR1                0.008   gamma-aminobutyric acid (GABA) B receptor 1 isoform ...
LOC643153             0.008   PREDICTED: hypothetical protein 
LOC643153             0.008   PREDICTED: hypothetical protein 
LOC643153             0.008   PREDICTED: hypothetical protein 
GSPT1                 0.008   G1 to S phase transition 1 isoform 2 
GSPT1                 0.008   G1 to S phase transition 1 isoform 1 
LDLR                  0.008   low density lipoprotein receptor precursor 
BSN                   0.008   bassoon protein 
COL15A1               0.008   alpha 1 type XV collagen precursor 
POLG                  0.008   DNA-directed DNA polymerase gamma 
POLG                  0.008   DNA-directed DNA polymerase gamma 
LOC100292378          0.008   PREDICTED: hypothetical protein 
LOC100291868          0.008   PREDICTED: hypothetical protein XP_002345322 
LOC100290196          0.008   PREDICTED: hypothetical protein XP_002347647 
LOC100289429          0.008   PREDICTED: hypothetical protein XP_002342197 
LOC100133301          0.008   PREDICTED: hypothetical protein 
SOX10                 0.008   SRY (sex determining region Y)-box 10 
B3GALNT2              0.008   beta-1,3-N-acetylgalactosaminyltransferase 2 
TTLL10                0.008   tubulin tyrosine ligase-like family, member 10 isof...
C7orf51               0.008   hypothetical protein FLJ37538 
LOC100288131          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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