Guide to the Human Genome
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Name: C1orf210 Sequence: fasta or formatted (113aa) NCBI GI: 32698864
Description:

hypothetical protein LOC149466

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         11           2
 C cysteine            1.8          2           1
 D aspartate           5.3          6           3
 E glutamate           7.1          8           1
 F phenylalanine       2.7          3           1
 G glycine            12.4         14           2
 H histidine           3.5          4           1
 I isoleucine          2.7          3           1
 K lysine              1.8          2           1
 L leucine            10.6         12           2
 M methionine          0.9          1           1
 N asparagine          2.7          3           1
 P proline             8.0          9           1
 Q glutamine           1.8          2           1
 R arginine            7.1          8           2
 S serine              5.3          6           1
 T threonine           6.2          7           1
 V valine              7.1          8           2
 W tryptophan          0.9          1           1
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC149466 
LRRC19                0.081   leucine rich repeat containing 19 
SDC3                  0.033   syndecan 3 
LOC100293413          0.028   PREDICTED: hypothetical protein 
RSPH3                 0.024   radial spoke 3 homolog 
LOC100134152          0.024   PREDICTED: similar to synaptotagmin XV-b 
SYT7                  0.019   synaptotagmin VII 
TMX4                  0.019   thioredoxin-related transmembrane protein 4 
PCDH1                 0.019   protocadherin 1 isoform 2 precursor 
PCDH1                 0.019   protocadherin 1 isoform 1 precursor 
ZNF691                0.019   zinc finger protein 691 
DCHS2                 0.014   dachsous 2 isoform 3 
DCHS2                 0.014   dachsous 2 isoform 2 
PTPRG                 0.014   protein tyrosine phosphatase, receptor type, G prec...
SIAH2                 0.014   seven in absentia homolog 2 
GZMH                  0.014   granzyme H 
TP53I13               0.014   tumor protein p53 inducible protein 13 
NCAM1                 0.014   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.014   neural cell adhesion molecule 1 isoform 2 
PTGIR                 0.014   prostaglandin I2 (prostacyclin) receptor (IP) 
NAGPA                 0.014   N-acetylglucosamine-1-phosphodiester alpha-N-acetylg...
SLC34A3               0.014   solute carrier family 34 (sodium phosphate), member ...
ITGA6                 0.009   integrin alpha chain, alpha 6 isoform b precursor [...
LAT                   0.009   linker for activation of T cells isoform d 
LAT                   0.009   linker for activation of T cells isoform c 
LAT                   0.009   linker for activation of T cells isoform b 
LAT                   0.009   linker for activation of T cells isoform a 
LOC100133554          0.009   PREDICTED: hypothetical protein 
LOC100127894          0.009   PREDICTED: hypothetical protein 
LOC100133554          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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