Guide to the Human Genome
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Name: HCST Sequence: fasta or formatted (93aa) NCBI GI: 15826850
Description:

hematopoietic cell signal transducer isoform 1 precursor

Referenced in:

Lectin Families

Other entries for this name:
alt prot [92aa] hematopoietic cell signal transducer isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         12           3
 C cysteine            3.2          3           1
 D aspartate           2.2          2           1
 E glutamate           2.2          2           1
 F phenylalanine       3.2          3           1
 G glycine            11.8         11           1
 H histidine           2.2          2           1
 I isoleucine          4.3          4           1
 K lysine              1.1          1           1
 L leucine            16.1         15           4
 M methionine          2.2          2           1
 N asparagine          1.1          1           1
 P proline             8.6          8           1
 Q glutamine           2.2          2           1
 R arginine            5.4          5           2
 S serine              9.7          9           2
 T threonine           3.2          3           2
 V valine              6.5          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hematopoietic cell signal transducer isoform 1 precu... 
HCST                  0.957   hematopoietic cell signal transducer isoform 2 precu...
TYROBP                0.037   TYRO protein tyrosine kinase binding protein isoform...
TYROBP                0.037   TYRO protein tyrosine kinase binding protein isoform ...
PTPRN                 0.037   protein tyrosine phosphatase, receptor type, N precur...
PTTG1IP               0.031   pituitary tumor-transforming gene 1 protein-interacti...
TAOK2                 0.019   TAO kinase 2 isoform 2 
BAI2                  0.019   brain-specific angiogenesis inhibitor 2 
LOC100288473          0.012   PREDICTED: hypothetical protein XP_002343336 
EIF2AK3               0.012   eukaryotic translation initiation factor 2-alpha ki...
C9orf82               0.012   hypothetical protein LOC79886 
SIRPB2                0.012   signal-regulatory protein beta 2 isoform 2 
SIRPB2                0.012   signal-regulatory protein beta 2 isoform 1 
LGR6                  0.012   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.012   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.012   leucine-rich repeat-containing G protein-coupled rec...
SORL1                 0.012   sortilin-related receptor containing LDLR class A rep...
C1orf210              0.012   hypothetical protein LOC149466 
SALL3                 0.012   sal-like 3 
EPHB3                 0.012   ephrin receptor EphB3 precursor 
CLPP                  0.006   caseinolytic peptidase, ATP-dependent, proteolytic su...
MR1                   0.006   major histocompatibility complex, class I-related [Ho...
LOC100289756          0.006   PREDICTED: hypothetical protein XP_002348004 
LOC100286981          0.006   PREDICTED: hypothetical protein XP_002343724 
TRIM56                0.006   tripartite motif-containing 56 
FOXQ1                 0.006   forkhead box Q1 
CD68                  0.006   CD68 antigen isoform B 
CD68                  0.006   CD68 antigen isoform A 
DPEP2                 0.006   dipeptidase 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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