Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HCST Sequence: fasta or formatted (92aa) NCBI GI: 56117854
Description:

hematopoietic cell signal transducer isoform 2 precursor

Referenced in:

Lectin Families

Other entries for this name:
alt prot [93aa] hematopoietic cell signal transducer isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         12           3
 C cysteine            3.3          3           1
 D aspartate           2.2          2           1
 E glutamate           1.1          1           1
 F phenylalanine       3.3          3           1
 G glycine            12.0         11           1
 H histidine           2.2          2           1
 I isoleucine          4.3          4           1
 K lysine              1.1          1           1
 L leucine            16.3         15           4
 M methionine          2.2          2           1
 N asparagine          1.1          1           1
 P proline             8.7          8           1
 Q glutamine           2.2          2           1
 R arginine            5.4          5           2
 S serine              9.8          9           2
 T threonine           3.3          3           2
 V valine              6.5          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hematopoietic cell signal transducer isoform 2 precu... 
HCST                  0.969   hematopoietic cell signal transducer isoform 1 precu...
PTPRN                 0.037   protein tyrosine phosphatase, receptor type, N precur...
TYROBP                0.031   TYRO protein tyrosine kinase binding protein isoform...
TYROBP                0.031   TYRO protein tyrosine kinase binding protein isoform ...
PTTG1IP               0.031   pituitary tumor-transforming gene 1 protein-interacti...
TAOK2                 0.019   TAO kinase 2 isoform 2 
BAI2                  0.019   brain-specific angiogenesis inhibitor 2 
KIAA0907              0.019   hypothetical protein LOC22889 
LGR6                  0.019   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.019   leucine-rich repeat-containing G protein-coupled rec...
LGR6                  0.019   leucine-rich repeat-containing G protein-coupled rec...
LOC100288473          0.013   PREDICTED: hypothetical protein XP_002343336 
EIF2AK3               0.013   eukaryotic translation initiation factor 2-alpha ki...
C9orf82               0.013   hypothetical protein LOC79886 
SORL1                 0.013   sortilin-related receptor containing LDLR class A rep...
CLPP                  0.013   caseinolytic peptidase, ATP-dependent, proteolytic su...
SALL3                 0.013   sal-like 3 
EPHB3                 0.013   ephrin receptor EphB3 precursor 
LOC100289756          0.006   PREDICTED: hypothetical protein XP_002348004 
LOC100288836          0.006   PREDICTED: hypothetical protein XP_002343912 
LOC100286981          0.006   PREDICTED: hypothetical protein XP_002343724 
RIC3                  0.006   resistance to inhibitors of cholinesterase 3 homolo...
TRIM56                0.006   tripartite motif-containing 56 
FOXQ1                 0.006   forkhead box Q1 
CD68                  0.006   CD68 antigen isoform B 
CD68                  0.006   CD68 antigen isoform A 
DPEP2                 0.006   dipeptidase 2 precursor 
C1orf210              0.006   hypothetical protein LOC149466 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press