Guide to the Human Genome
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Name: LIM2 Sequence: fasta or formatted (173aa) NCBI GI: 239916002
Description:

lens intrinsic membrane protein 2, 19kDa isoform 2

Referenced in:

Crystallins and Other Eye Proteins

Other entries for this name:
alt prot [215aa] lens intrinsic membrane protein 2, 19kDa isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         17           1
 C cysteine            3.5          6           1
 D aspartate           1.7          3           1
 E glutamate           0.6          1           1
 F phenylalanine       9.2         16           2
 G glycine             8.7         15           3
 H histidine           2.3          4           1
 I isoleucine          6.9         12           2
 K lysine              0.6          1           1
 L leucine             9.2         16           2
 M methionine          5.8         10           1
 N asparagine          1.2          2           1
 P proline             1.7          3           1
 Q glutamine           2.3          4           1
 R arginine            6.9         12           2
 S serine              8.7         15           2
 T threonine           5.8         10           1
 V valine              5.8         10           2
 W tryptophan          4.0          7           1
 Y tyrosine            5.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lens intrinsic membrane protein 2, 19kDa isoform 2 ... 
LIM2                  0.941   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
EMP1                  0.092   epithelial membrane protein 1 
CLDND2                0.089   claudin domain containing 2 
NKG7                  0.077   natural killer cell group 7 sequence 
TMEM202               0.071   transmembrane protein 202 
EMP2                  0.059   epithelial membrane protein 2 
PMP22                 0.053   peripheral myelin protein 22 
PMP22                 0.053   peripheral myelin protein 22 
PMP22                 0.053   peripheral myelin protein 22 
CLDN18                0.053   claudin 18 isoform 2 
CACNG2                0.038   voltage-dependent calcium channel gamma-2 subunit [Ho...
CACNG3                0.038   voltage-dependent calcium channel gamma-3 subunit [Ho...
LOC391359             0.036   PREDICTED: similar to hCG1784039 
CLDN18                0.036   claudin 18 isoform 1 
CACNG1                0.036   voltage-dependent calcium channel gamma-1 subunit [Ho...
CACNG5                0.033   voltage-dependent calcium channel gamma-5 subunit is...
CACNG8                0.033   voltage-dependent calcium channel gamma-8 subunit [H...
TMEM47                0.030   transmembrane protein 47 
CACNG4                0.030   voltage-dependent calcium channel gamma-4 subunit [Ho...
MS4A14                0.027   membrane-spanning 4-domains, subfamily A, member 14...
MS4A14                0.027   membrane-spanning 4-domains, subfamily A, member 14...
TMEM114               0.027   PREDICTED: transmembrane protein 114 
TMEM114               0.027   PREDICTED: transmembrane protein 114, partial [Homo...
TMEM114               0.027   transmembrane protein 114 
CLDN15                0.027   claudin 15 
CLDN11                0.024   claudin 11 
CACNG5                0.024   voltage-dependent calcium channel gamma-5 subunit iso...
CLDN16                0.021   claudin 16 
CLDN10                0.021   claudin 10 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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