LIM2 23554

Name: LIM2	Sequence: fasta or formatted (173aa)		NCBI GI: 239916002
Description: lens intrinsic membrane protein 2, 19kDa isoform 2		Referenced in: Crystallins and Other Eye Proteins
Other entries for this name: alt prot [215aa] lens intrinsic membrane protein 2, 19kDa isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.8 17 1 C cysteine 3.5 6 1 D aspartate 1.7 3 1 E glutamate 0.6 1 1 F phenylalanine 9.2 16 2 G glycine 8.7 15 3 H histidine 2.3 4 1 I isoleucine 6.9 12 2 K lysine 0.6 1 1 L leucine 9.2 16 2 M methionine 5.8 10 1 N asparagine 1.2 2 1 P proline 1.7 3 1 Q glutamine 2.3 4 1 R arginine 6.9 12 2 S serine 8.7 15 2 T threonine 5.8 10 1 V valine 5.8 10 2 W tryptophan 4.0 7 1 Y tyrosine 5.2 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 lens intrinsic membrane protein 2, 19kDa isoform 2 ... LIM2 0.941 lens intrinsic membrane protein 2, 19kDa isoform 1 [... EMP1 0.092 epithelial membrane protein 1 CLDND2 0.089 claudin domain containing 2 NKG7 0.077 natural killer cell group 7 sequence TMEM202 0.071 transmembrane protein 202 EMP2 0.059 epithelial membrane protein 2 PMP22 0.053 peripheral myelin protein 22 PMP22 0.053 peripheral myelin protein 22 PMP22 0.053 peripheral myelin protein 22 CLDN18 0.053 claudin 18 isoform 2 CACNG2 0.038 voltage-dependent calcium channel gamma-2 subunit [Ho... CACNG3 0.038 voltage-dependent calcium channel gamma-3 subunit [Ho... LOC391359 0.036 PREDICTED: similar to hCG1784039 CLDN18 0.036 claudin 18 isoform 1 CACNG1 0.036 voltage-dependent calcium channel gamma-1 subunit [Ho... CACNG5 0.033 voltage-dependent calcium channel gamma-5 subunit is... CACNG8 0.033 voltage-dependent calcium channel gamma-8 subunit [H... TMEM47 0.030 transmembrane protein 47 CACNG4 0.030 voltage-dependent calcium channel gamma-4 subunit [Ho... MS4A14 0.027 membrane-spanning 4-domains, subfamily A, member 14... MS4A14 0.027 membrane-spanning 4-domains, subfamily A, member 14... TMEM114 0.027 PREDICTED: transmembrane protein 114 TMEM114 0.027 PREDICTED: transmembrane protein 114, partial [Homo... TMEM114 0.027 transmembrane protein 114 CLDN15 0.027 claudin 15 CLDN11 0.024 claudin 11 CACNG5 0.024 voltage-dependent calcium channel gamma-5 subunit iso... CLDN16 0.021 claudin 16 CLDN10 0.021 claudin 10 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.