Guide to the Human Genome
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Name: LOC343052 Sequence: fasta or formatted (654aa) NCBI GI: 239747467
Description:

PREDICTED: similar to hCG1996527

Not currently referenced in the text

Other entries for this name:
alt prot {654aa} PREDICTED: similar to hCG1996527
alt prot {654aa} PREDICTED: similar to hCG1996527
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         54           2
 C cysteine            2.9         19           1
 D aspartate           2.6         17           1
 E glutamate           5.2         34           1
 F phenylalanine       1.5         10           1
 G glycine             9.2         60           2
 H histidine           3.5         23           1
 I isoleucine          3.8         25           2
 K lysine              1.2          8           1
 L leucine            12.2         80           6
 M methionine          1.1          7           1
 N asparagine          3.5         23           2
 P proline             7.5         49           2
 Q glutamine           4.7         31           1
 R arginine            5.4         35           2
 S serine             10.6         69           2
 T threonine           5.0         33           1
 V valine              8.3         54           3
 W tryptophan          2.0         13           1
 Y tyrosine            1.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1996527 
LOC343052             0.996   PREDICTED: similar to hCG1996527 
LOC343052             0.993   PREDICTED: similar to hCG1996527 
IGDCC3                0.383   putative neuronal cell adhesion molecule 
PRTG                  0.233   protogenin 
IGDCC4                0.168   immunoglobulin superfamily, DCC subclass, member 4 [...
NEO1                  0.124   neogenin homolog 1 
DCC                   0.114   deleted in colorectal carcinoma 
ROBO1                 0.090   roundabout 1 isoform d 
ROBO1                 0.090   roundabout 1 isoform c 
LOC642132             0.090   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.090   PREDICTED: similar to roundabout 1 isoform 2 
HMCN2                 0.088   PREDICTED: hemicentin 2 
HMCN2                 0.088   PREDICTED: hemicentin 2 
ROBO1                 0.087   roundabout 1 isoform b 
HMCN2                 0.087   PREDICTED: hemicentin 2 
ROBO1                 0.087   roundabout 1 isoform a 
ROBO2                 0.085   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO3                 0.085   roundabout, axon guidance receptor, homolog 3 
ROBO2                 0.084   roundabout, axon guidance receptor, homolog 2 isofor...
PXDN                  0.078   peroxidasin 
HMCN1                 0.074   hemicentin 1 
PTK7                  0.074   PTK7 protein tyrosine kinase 7 isoform b precursor [...
PXDNL                 0.071   peroxidasin homolog-like 
BOC                   0.071   brother of CDO 
LOC100292387          0.065   PREDICTED: similar to hemicentin 2 
CNTN4                 0.065   contactin 4 isoform a precursor 
PTPRS                 0.063   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.063   protein tyrosine phosphatase, receptor type, sigma ...
CNTN5                 0.063   contactin 5 isoform long 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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