Guide to the Human Genome
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Name: LIM2 Sequence: fasta or formatted (215aa) NCBI GI: 21361300
Description:

lens intrinsic membrane protein 2, 19kDa isoform 1

Referenced in:

Crystallins and Other Eye Proteins

Other entries for this name:
alt prot [173aa] lens intrinsic membrane protein 2, 19kDa isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         21           1
 C cysteine            2.8          6           1
 D aspartate           1.9          4           1
 E glutamate           1.4          3           1
 F phenylalanine       7.4         16           2
 G glycine            11.2         24           3
 H histidine           2.3          5           1
 I isoleucine          5.6         12           2
 K lysine              1.9          4           1
 L leucine             9.3         20           2
 M methionine          4.7         10           1
 N asparagine          0.9          2           1
 P proline             2.8          6           2
 Q glutamine           3.3          7           1
 R arginine            7.9         17           2
 S serine              7.9         17           2
 T threonine           5.6         12           1
 V valine              4.7         10           2
 W tryptophan          4.2          9           1
 Y tyrosine            4.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lens intrinsic membrane protein 2, 19kDa isoform 1 [... 
LIM2                  0.743   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
EMP1                  0.044   epithelial membrane protein 1 
CLDND2                0.040   claudin domain containing 2 
NKG7                  0.033   natural killer cell group 7 sequence 
CLDN18                0.033   claudin 18 isoform 2 
PMP22                 0.028   peripheral myelin protein 22 
PMP22                 0.028   peripheral myelin protein 22 
PMP22                 0.028   peripheral myelin protein 22 
EMP2                  0.028   epithelial membrane protein 2 
CACNG1                0.028   voltage-dependent calcium channel gamma-1 subunit [Ho...
TMEM202               0.023   transmembrane protein 202 
MS4A14                0.021   membrane-spanning 4-domains, subfamily A, member 14...
MS4A14                0.021   membrane-spanning 4-domains, subfamily A, member 14...
PLEKHA4               0.019   pleckstrin homology domain containing family A memb...
PLEKHA4               0.019   pleckstrin homology domain containing family A memb...
CLDN18                0.019   claudin 18 isoform 1 
CACNG5                0.019   voltage-dependent calcium channel gamma-5 subunit is...
CACNG3                0.016   voltage-dependent calcium channel gamma-3 subunit [Ho...
TMEM47                0.016   transmembrane protein 47 
CACNG6                0.016   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.016   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.016   voltage-dependent calcium channel gamma-6 subunit is...
TMEM114               0.014   PREDICTED: transmembrane protein 114 
TMEM114               0.014   PREDICTED: transmembrane protein 114, partial [Homo...
TMEM114               0.014   PREDICTED: transmembrane protein 114 
TMEM114               0.014   transmembrane protein 114 
CLDN15                0.014   claudin 15 
EMP3                  0.012   epithelial membrane protein 3 
LOC391359             0.009   PREDICTED: similar to hCG1784039 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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