Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506851
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 226 2e-60
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 182 6e-47
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 87 3e-18
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 83 5e-17
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 80 3e-16
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 78 2e-15
gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4) ... 75 1e-14
gi|4505735 platelet factor 4 variant 1 [Homo sapiens] 69 1e-12
gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens] 60 5e-10
gi|10834978 interleukin 8 precursor [Homo sapiens] 59 6e-10
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 56 5e-09
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 52 1e-07
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac... 49 7e-07
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 40 4e-04
gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 37 0.003
gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Hom... 37 0.003
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 37 0.004
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 37 0.004
gi|22538804 small inducible cytokine A22 precursor [Homo sapiens] 37 0.004
gi|22538814 small inducible cytokine A5 precursor [Homo sapiens] 36 0.008
gi|5454040 small inducible cytokine A19 precursor [Homo sapiens] 36 0.008
gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Hom... 36 0.008
gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Hom... 36 0.008
gi|22538816 small inducible cytokine A8 precursor [Homo sapiens] 35 0.010
gi|4885589 small inducible cytokine B11 precursor [Homo sapiens] 35 0.013
gi|4506831 small inducible cytokine A18 precursor [Homo sapiens] 35 0.017
gi|20149565 small inducible cytokine B14 precursor [Homo sapiens] 34 0.029
gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens] 32 0.083
gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo sapi... 32 0.11
gi|22165427 small inducible cytokine A24 precursor [Homo sapiens] 31 0.18
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 226 bits (577), Expect = 2e-60
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP 60
MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
Sbjct: 1 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP 60
Query: 61 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 114
KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
Sbjct: 61 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 114
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 182 bits (461), Expect = 6e-47
Identities = 91/114 (79%), Positives = 98/114 (85%)
Query: 1 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP 60
MSL SSRAARVPGPS SLCALL LLLLLT PGP+ASAGP +AVL ELRC CL+ T V+P
Sbjct: 1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP 60
Query: 61 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 114
K I LQVF GPQCSKVEVVASLKNGK++CLDPEAPFLKKVIQKILD GNK+N
Sbjct: 61 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN 114
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 87.0 bits (214), Expect = 3e-18
Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 6 SRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGK 65
+RAA PS +ALLLLL +AG ++V TELRC CL+ ++PK I
Sbjct: 2 ARAALSAAPSNPRLLRVALLLLLLVAAGRRAAG--ASVATELRCQCLQTLQGIHPKNIQS 59
Query: 66 LQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDS 109
+ V GP C++ EV+A+LKNG++ CL+P +P +KK+I+K+L+S
Sbjct: 60 VNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS 103
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 82.8 bits (203), Expect = 5e-17
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 14 PSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGP 73
PS +ALLLLL +AG ++V+TELRC CL+ ++ K I + V GP
Sbjct: 10 PSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGP 67
Query: 74 QCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGN 111
C++ EV+A+LKNGK+ CL+P +P ++K+I+KIL+ G+
Sbjct: 68 HCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGS 105
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 80.5 bits (197), Expect = 3e-16
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 6 SRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGK 65
+RA PS +ALLLLL +AG + + TELRC CL+ ++ K I
Sbjct: 2 ARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHLKNIQS 59
Query: 66 LQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSG 110
++V GP C++ EV+A+LKNG++ CL+P +P +KK+I+K+L +G
Sbjct: 60 VKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG 104
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 77.8 bits (190), Expect = 2e-15
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 21/119 (17%)
Query: 4 PSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPV---------------SAVLTELR 48
PS +AR P +L LL L LLLT LAS+ S + ELR
Sbjct: 9 PSCNSAR---PLHALQVLLLLSLLLTA---LASSTKGQTKRNLAKGKEESLDSDLYAELR 62
Query: 49 CTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKIL 107
C C++ T ++PK I L+V G C++VEV+A+LK+G+++CLDP+AP +KK++QK L
Sbjct: 63 CMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKL 121
>gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4)
[Homo sapiens]
Length = 101
Score = 74.7 bits (182), Expect = 1e-14
Identities = 36/88 (40%), Positives = 57/88 (64%)
Query: 22 LALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVV 81
L L LL P +A A + +L+C C++ T +V P+ I L+V AGP C +++
Sbjct: 14 LLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLI 73
Query: 82 ASLKNGKQVCLDPEAPFLKKVIQKILDS 109
A+LKNG+++CLD +AP KK+I+K+L+S
Sbjct: 74 ATLKNGRKICLDLQAPLYKKIIKKLLES 101
>gi|4505735 platelet factor 4 variant 1 [Homo sapiens]
Length = 104
Score = 68.6 bits (166), Expect = 1e-12
Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 3 LPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKT 62
+ S+ +R+ + LALLLL P +A A + +L+C C++ T +V P+
Sbjct: 1 MSSAARSRLTRATRQEMLFLALLLL---PVVVAFARAEAEEDGDLQCLCVKTTSQVRPRH 57
Query: 63 IGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDS 109
I L+V AGP C +++A+LKNG+++CLD +A KK+I++ L+S
Sbjct: 58 ITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES 104
>gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
Length = 126
Score = 59.7 bits (143), Expect = 5e-10
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 15/116 (12%)
Query: 4 PSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPV---------SAVLTELRCTCLRV 54
PS +AR P +L LL L LLLT P + G S + EL C C++
Sbjct: 9 PSCNSAR---PFHALQVLLLLSLLLTAL-PSCTNGQSKRNLGKSKDSDLYIELCCVCVKS 64
Query: 55 TLRVNPKTI-GKLQVFP-AGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILD 108
++P I + ++ +G C+KV+V+A LK+G+++ LDPEAP +KK++QK+L+
Sbjct: 65 ASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKMLE 120
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 59.3 bits (142), Expect = 6e-10
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 22 LALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQVFPAGPQCSKVEV 80
+ALL L + ELRC C++ + +PK I +L+V +GP C+ E+
Sbjct: 7 VALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANTEI 66
Query: 81 VASLKNGKQVCLDPEAPFLKKVIQKIL 107
+ L +G+++CLDP+ ++++V++K L
Sbjct: 67 IVKLSDGRELCLDPKENWVQRVVEKFL 93
>gi|149999382 small inducible cytokine B10 precursor [Homo sapiens]
Length = 98
Score = 56.2 bits (134), Expect = 5e-09
Identities = 30/96 (31%), Positives = 60/96 (62%), Gaps = 7/96 (7%)
Query: 21 LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQVFPAGPQCSKVE 79
L+ L+ LT G P+S + RCTC+ ++ + VNP+++ KL++ PA C +VE
Sbjct: 7 LICCLIFLTLSG--IQGVPLSRTV---RCTCISISNQPVNPRSLEKLEIIPASQFCPRVE 61
Query: 80 VVASL-KNGKQVCLDPEAPFLKKVIQKILDSGNKKN 114
++A++ K G++ CL+PE+ +K +++ + +K++
Sbjct: 62 IIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRS 97
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 51.6 bits (122), Expect = 1e-07
Identities = 22/64 (34%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 43 VLTELRCTCLRVTL-RVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKK 101
V+ + RC+C+ ++ +++ L+ F P C K+E++A+LKNG Q CL+P++ +K+
Sbjct: 25 VVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKE 84
Query: 102 VIQK 105
+I+K
Sbjct: 85 LIKK 88
>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
chemoattractant) [Homo sapiens]
Length = 109
Score = 49.3 bits (116), Expect = 7e-07
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 23 ALLLLLTPPGPLASAGPVSAVL----TELRCTCLRVTLRVNPKT-IGKLQVFPAGPQCSK 77
+LLL+L ++S PV VL T LRC C++ + P+ I ++Q+ P G C +
Sbjct: 7 SLLLMLL----VSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPR 62
Query: 78 VEVVASLKNGKQVCLDPEAPFLKKVIQ 104
E++ KN VC+DP+A +++++++
Sbjct: 63 KEIIVWKKNKSIVCVDPQAEWIQRMME 89
>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform gamma [Homo sapiens]
Length = 119
Score = 40.0 bits (92), Expect = 4e-04
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 21 LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEV 80
++ +L+L+ L+ PVS RC C V + L++ P C+ +++
Sbjct: 5 VVVVLVLVLTALCLSDGKPVSL---SYRCPCRFFESHVARANVKHLKILNT-PNCA-LQI 59
Query: 81 VASLKNG-KQVCLDPEAPFLKKVIQKILDSGNKK 113
VA LKN +QVC+DP+ ++++ ++K L+ G ++
Sbjct: 60 VARLKNNNRQVCIDPKLKWIQEYLEKALNKGRRE 93
>gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Homo
sapiens]
Length = 93
Score = 37.0 bits (84), Expect = 0.003
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 17 SLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCS 76
S AL LL + + SA P++A T C C T R P+ F QCS
Sbjct: 4 STAALAVLLCTMALCNQVLSA-PLAAD-TPTAC-CFSYTSRQIPQNF-IADYFETSSQCS 59
Query: 77 KVEVVASLKNGKQVCLDPEAPFLKKVIQKI 106
K V+ K G+QVC DP +++K + +
Sbjct: 60 KPSVIFLTKRGRQVCADPSEEWVQKYVSDL 89
>gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Homo
sapiens]
Length = 93
Score = 37.0 bits (84), Expect = 0.003
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 17 SLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCS 76
S AL LL + + SA P++A T C C T R P+ F QCS
Sbjct: 4 STAALAVLLCTMALCNQVLSA-PLAAD-TPTAC-CFSYTSRQIPQNF-IADYFETSSQCS 59
Query: 77 KVEVVASLKNGKQVCLDPEAPFLKKVIQKI 106
K V+ K G+QVC DP +++K + +
Sbjct: 60 KPSVIFLTKRGRQVCADPSEEWVQKYVSDL 89
>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform beta [Homo sapiens]
Length = 93
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 21 LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEV 80
++ +L+L+ L+ PVS RC C V + L++ P C+ +++
Sbjct: 5 VVVVLVLVLTALCLSDGKPVSL---SYRCPCRFFESHVARANVKHLKILNT-PNCA-LQI 59
Query: 81 VASLKNG-KQVCLDPEAPFLKKVIQKILD 108
VA LKN +QVC+DP+ ++++ ++K L+
Sbjct: 60 VARLKNNNRQVCIDPKLKWIQEYLEKALN 88
>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform alpha [Homo sapiens]
Length = 89
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 21 LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEV 80
++ +L+L+ L+ PVS RC C V + L++ P C+ +++
Sbjct: 5 VVVVLVLVLTALCLSDGKPVSL---SYRCPCRFFESHVARANVKHLKILNT-PNCA-LQI 59
Query: 81 VASLKNG-KQVCLDPEAPFLKKVIQKILD 108
VA LKN +QVC+DP+ ++++ ++K L+
Sbjct: 60 VARLKNNNRQVCIDPKLKWIQEYLEKALN 88
>gi|22538804 small inducible cytokine A22 precursor [Homo sapiens]
Length = 93
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 20 ALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVE 79
ALL +L+LL AGP A + + C V R+ + + + C +
Sbjct: 7 ALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHF--YWTSDSCPRPG 64
Query: 80 VVASLKNGKQVCLDPEAPFLKKVIQKI 106
VV K++C DP P++K ++ K+
Sbjct: 65 VVLLTFRDKEICADPRVPWVKMILNKL 91
>gi|22538814 small inducible cytokine A5 precursor [Homo sapiens]
Length = 91
Score = 35.8 bits (81), Expect = 0.008
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 20 ALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVE 79
A LA++L+ T ASA P S+ T C R P+ K + +G +CS
Sbjct: 6 AALAVILIATALCAPASASPYSSDTTPC---CFAYIARPLPRAHIKEYFYTSG-KCSNPA 61
Query: 80 VVASLKNGKQVCLDPEAPFLKKVIQKI 106
VV + +QVC +PE ++++ I +
Sbjct: 62 VVFVTRKNRQVCANPEKKWVREYINSL 88
>gi|5454040 small inducible cytokine A19 precursor [Homo sapiens]
Length = 98
Score = 35.8 bits (81), Expect = 0.008
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 17 SLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGK-LQVFPAGPQC 75
+L L+LL+L T P P S + CL VT + P I + C
Sbjct: 2 ALLLALSLLVLWTSPAPTLSG------TNDAEDCCLSVTQKPIPGYIVRNFHYLLIKDGC 55
Query: 76 SKVEVVASLKNGKQVCLDPEAPFLKKVIQKI 106
VV + G+Q+C P+ P+++++IQ++
Sbjct: 56 RVPAVVFTTLRGRQLCAPPDQPWVERIIQRL 86
>gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Homo
sapiens]
Length = 92
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 17 SLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCS 76
SL L+A L P+ S P + C T R P+ + + CS
Sbjct: 9 SLLVLVAAFCSLALSAPMGSDPPTAC--------CFSYTARKLPRNF-VVDYYETSSLCS 59
Query: 77 KVEVVASLKNGKQVCLDPEAPFLKKVI 103
+ VV K GKQVC DP ++++ +
Sbjct: 60 QPAVVFQTKRGKQVCADPSESWVQEYV 86
>gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Homo
sapiens]
Length = 92
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 17 SLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCS 76
SL L+A L P+ S P + C T R P+ + + CS
Sbjct: 9 SLLVLVAAFCSLALSAPMGSDPPTAC--------CFSYTARKLPRNF-VVDYYETSSLCS 59
Query: 77 KVEVVASLKNGKQVCLDPEAPFLKKVI 103
+ VV K GKQVC DP ++++ +
Sbjct: 60 QPAVVFQTKRGKQVCADPSESWVQEYV 86
>gi|22538816 small inducible cytokine A8 precursor [Homo sapiens]
Length = 99
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 20 ALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFP--AGPQCSK 77
ALL LLL+ P A P S V + C C V R P I +L+ + QC K
Sbjct: 6 ALLCLLLMAATFSPQGLAQPDS-VSIPITC-CFNVINRKIP--IQRLESYTRITNIQCPK 61
Query: 78 VEVVASLKNGKQVCLDPEAPFLK 100
V+ K GK+VC DP+ +++
Sbjct: 62 EAVIFKTKRGKEVCADPKERWVR 84
>gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]
Length = 94
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 48 RCTCLRVTLR-VNPKTIGKLQVFPAGPQCSKVEVVASLKNGK-QVCLDPEAPFLKKVIQK 105
RC C+ ++ V I K + C K+EV+ +LK K Q CL+P++ + +I+K
Sbjct: 29 RCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKK 88
Query: 106 I 106
+
Sbjct: 89 V 89
>gi|4506831 small inducible cytokine A18 precursor [Homo sapiens]
Length = 89
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 21 LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEV 80
L A LL+L L S V + C + + ++ K I + PQC K V
Sbjct: 4 LAAALLVLVCTMALCSCAQVGT--NKELCCLVYTSWQIPQKFI--VDYSETSPQCPKPGV 59
Query: 81 VASLKNGKQVCLDPEAPFLKKVIQKI 106
+ K G+Q+C DP +++K I +
Sbjct: 60 ILLTKRGRQICADPNKKWVQKYISDL 85
>gi|20149565 small inducible cytokine B14 precursor [Homo sapiens]
Length = 111
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 10 RVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVF 69
R P S L A LLLLL +A + +C C R ++ + KL++
Sbjct: 7 RAPPVSMRLLAAALLLLLLAL---------YTARVDGSKCKCSRKGPKIRYSDVKKLEMK 57
Query: 70 PAGPQCSKVEVVASLKN-----GKQVCLDPEAPFLKKVIQ 104
P P C + V+ + K+ G++ CL P+ K+ I+
Sbjct: 58 PKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIK 97
>gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens]
Length = 92
Score = 32.3 bits (72), Expect = 0.083
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 51 CLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKI 106
C T R P+ F QCSK V+ K +QVC DP +++K + +
Sbjct: 34 CFSYTSRQIPQNF-IADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDL 88
>gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo
sapiens]
Length = 113
Score = 32.0 bits (71), Expect = 0.11
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 69 FPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKI 106
F +CSK V+ K G+QVC P P ++ ++K+
Sbjct: 71 FETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKL 108
>gi|22165427 small inducible cytokine A24 precursor [Homo sapiens]
Length = 119
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 39 PVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPF 98
P +V+ C V+ R+ + Q+ + C K V+ + K G+Q C DP+ +
Sbjct: 23 PTGSVVIPSPCCMFFVSKRIPENRVVSYQL-SSRSTCLKAGVIFTTKKGQQFCGDPKQEW 81
Query: 99 LKKVIQKILDSGNKK 113
+++ + K LD+ KK
Sbjct: 82 VQRYM-KNLDAKQKK 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,436,207
Number of Sequences: 37866
Number of extensions: 247561
Number of successful extensions: 883
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 88
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.