Guide to the Human Genome
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Name: CXCL3 Sequence: fasta or formatted (107aa) NCBI GI: 54144650
Description:

chemokine (C-X-C motif) ligand 3

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         14           2
 C cysteine            3.7          4           1
 D aspartate           0.0          0           0
 E glutamate           2.8          3           1
 F phenylalanine       0.0          0           0
 G glycine             4.7          5           1
 H histidine           2.8          3           1
 I isoleucine          5.6          6           2
 K lysine              6.5          7           2
 L leucine            15.0         16           6
 M methionine          1.9          2           1
 N asparagine          6.5          7           1
 P proline             5.6          6           1
 Q glutamine           5.6          6           1
 R arginine            5.6          6           2
 S serine              7.5          8           1
 T threonine           5.6          6           1
 V valine              7.5          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-X-C motif) ligand 3 
CXCL2                 0.875   chemokine (C-X-C motif) ligand 2 
CXCL1                 0.864   chemokine (C-X-C motif) ligand 1 
CXCL5                 0.359   chemokine (C-X-C motif) ligand 5 precursor 
CXCL6                 0.315   chemokine (C-X-C motif) ligand 6 (granulocyte chemota...
PPBP                  0.310   pro-platelet basic protein precursor 
PF4                   0.266   platelet factor 4 (chemokine (C-X-C motif) ligand 4) ...
IL8                   0.239   interleukin 8 precursor 
CXCL9                 0.234   small inducible cytokine B9 precursor 
PF4V1                 0.212   platelet factor 4 variant 1 
PPBPL1                0.163   pro-platelet basic protein-like 1 
CXCL14                0.120   small inducible cytokine B14 precursor 
CXCL12                0.109   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL13                0.109   chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac...
CXCL12                0.098   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.098   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL11                0.098   small inducible cytokine B11 precursor 
CXCL10                0.092   small inducible cytokine B10 precursor 
CCL26                 0.043   chemokine (C-C motif) ligand 26 precursor 
CCL18                 0.043   small inducible cytokine A18 precursor 
PRRT3                 0.038   proline-rich transmembrane protein 3 
CCL4L1                0.027   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.027   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL13                 0.022   small inducible cytokine A13 precursor 
CCL15                 0.016   chemokine (C-C motif) ligand 15 precursor 
XCL1                  0.016   chemokine (C motif) ligand 1 
CCL3L1                0.016   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.016   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL14                 0.011   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL24                 0.011   small inducible cytokine A24 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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