Guide to the Human Genome
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Name: CXCL10 Sequence: fasta or formatted (98aa) NCBI GI: 149999382
Description:

small inducible cytokine B10 precursor

Referenced in:

Chemokines and Their Receptors
Interferon

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          5           1
 C cysteine            6.1          6           2
 D aspartate           0.0          0           0
 E glutamate           6.1          6           1
 F phenylalanine       2.0          2           1
 G glycine             3.1          3           1
 H histidine           0.0          0           0
 I isoleucine         11.2         11           2
 K lysine             10.2         10           3
 L leucine            10.2         10           2
 M methionine          2.0          2           1
 N asparagine          5.1          5           1
 P proline             7.1          7           1
 Q glutamine           4.1          4           1
 R arginine            7.1          7           1
 S serine             10.2         10           1
 T threonine           5.1          5           1
 V valine              5.1          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine B10 precursor 
CXCL9                 0.257   small inducible cytokine B9 precursor 
CXCL11                0.211   small inducible cytokine B11 precursor 
CXCL6                 0.181   chemokine (C-X-C motif) ligand 6 (granulocyte chemota...
CXCL13                0.152   chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac...
CXCL2                 0.146   chemokine (C-X-C motif) ligand 2 
CXCL5                 0.135   chemokine (C-X-C motif) ligand 5 precursor 
PPBP                  0.135   pro-platelet basic protein precursor 
CXCL1                 0.129   chemokine (C-X-C motif) ligand 1 
PF4                   0.129   platelet factor 4 (chemokine (C-X-C motif) ligand 4) ...
PF4V1                 0.123   platelet factor 4 variant 1 
IL8                   0.105   interleukin 8 precursor 
CXCL3                 0.099   chemokine (C-X-C motif) ligand 3 
CXCL12                0.070   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.070   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.064   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
XCL2                  0.035   chemokine (C motif) ligand 2 
XCL1                  0.029   chemokine (C motif) ligand 1 
MGA                   0.018   MAX gene associated 
PPBPL1                0.012   pro-platelet basic protein-like 1 
C12orf51              0.012   chromosome 12 open reading frame 51 
LOC100292217          0.006   PREDICTED: hypothetical protein 
LRRC6                 0.006   leucine rich repeat containing 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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