Guide to the Human Genome
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Name: PPBPL1 Sequence: fasta or formatted (126aa) NCBI GI: 221219042
Description:

pro-platelet basic protein-like 1

Referenced in:

Chemokines and Their Receptors
Platelets and Megakaryocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          9           1
 C cysteine            4.8          6           2
 D aspartate           4.0          5           1
 E glutamate           2.4          3           1
 F phenylalanine       0.8          1           1
 G glycine             6.3          8           1
 H histidine           2.4          3           1
 I isoleucine          7.1          9           2
 K lysine              8.7         11           2
 L leucine            15.1         19           4
 M methionine          3.2          4           1
 N asparagine          4.8          6           1
 P proline             6.3          8           1
 Q glutamine           3.2          4           1
 R arginine            4.0          5           1
 S serine             10.3         13           1
 T threonine           2.4          3           1
 V valine              4.8          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pro-platelet basic protein-like 1 
PPBP                  0.590   pro-platelet basic protein precursor 
CXCL5                 0.214   chemokine (C-X-C motif) ligand 5 precursor 
CXCL1                 0.166   chemokine (C-X-C motif) ligand 1 
CXCL6                 0.153   chemokine (C-X-C motif) ligand 6 (granulocyte chemota...
CXCL2                 0.148   chemokine (C-X-C motif) ligand 2 
CXCL3                 0.131   chemokine (C-X-C motif) ligand 3 
PF4                   0.127   platelet factor 4 (chemokine (C-X-C motif) ligand 4) ...
PF4V1                 0.100   platelet factor 4 variant 1 
IL8                   0.079   interleukin 8 precursor 
UBN1                  0.044   ubinuclein 1 
UBN1                  0.044   ubinuclein 1 
CXCL9                 0.039   small inducible cytokine B9 precursor 
CCL19                 0.031   small inducible cytokine A19 precursor 
CCL3L1                0.017   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.017   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
RET                   0.013   ret proto-oncogene isoform c 
RET                   0.013   ret proto-oncogene isoform a 
AVPR2                 0.013   arginine vasopressin receptor 2 isoform 1 
CCL18                 0.013   small inducible cytokine A18 precursor 
C1QTNF1               0.009   C1q and tumor necrosis factor related protein 1 isof...
CCL15                 0.009   chemokine (C-C motif) ligand 15 precursor 
CAND1                 0.009   TIP120 protein 
C1QTNF1               0.009   C1q and tumor necrosis factor related protein 1 isof...
SLITRK4               0.009   slit and trk like 4 protein 
CXCL10                0.009   small inducible cytokine B10 precursor 
CLEC16A               0.009   C-type lectin domain family 16, member A 
INTS2                 0.009   integrator complex subunit 2 
MFGE8                 0.009   milk fat globule-EGF factor 8 protein isoform b [Ho...
MFGE8                 0.009   milk fat globule-EGF factor 8 protein isoform a [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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