Guide to the Human Genome
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Name: CXCL2 Sequence: fasta or formatted (107aa) NCBI GI: 4504155
Description:

chemokine (C-X-C motif) ligand 2

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         15           2
 C cysteine            3.7          4           1
 D aspartate           0.0          0           0
 E glutamate           2.8          3           1
 F phenylalanine       0.0          0           0
 G glycine             4.7          5           1
 H histidine           1.9          2           1
 I isoleucine          4.7          5           2
 K lysine              9.3         10           2
 L leucine            15.9         17           6
 M methionine          2.8          3           1
 N asparagine          5.6          6           1
 P proline             6.5          7           1
 Q glutamine           5.6          6           1
 R arginine            5.6          6           2
 S serine              6.5          7           1
 T threonine           4.7          5           1
 V valine              5.6          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-X-C motif) ligand 2 
CXCL1                 0.880   chemokine (C-X-C motif) ligand 1 
CXCL3                 0.875   chemokine (C-X-C motif) ligand 3 
CXCL5                 0.348   chemokine (C-X-C motif) ligand 5 precursor 
PPBP                  0.332   pro-platelet basic protein precursor 
CXCL6                 0.299   chemokine (C-X-C motif) ligand 6 (granulocyte chemota...
PF4                   0.272   platelet factor 4 (chemokine (C-X-C motif) ligand 4) ...
CXCL9                 0.255   small inducible cytokine B9 precursor 
IL8                   0.255   interleukin 8 precursor 
PF4V1                 0.239   platelet factor 4 variant 1 
PPBPL1                0.185   pro-platelet basic protein-like 1 
CXCL14                0.141   small inducible cytokine B14 precursor 
CXCL10                0.136   small inducible cytokine B10 precursor 
CXCL12                0.109   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL11                0.098   small inducible cytokine B11 precursor 
CXCL13                0.098   chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac...
CXCL12                0.092   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.092   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
PRRT3                 0.038   proline-rich transmembrane protein 3 
CCL26                 0.033   chemokine (C-C motif) ligand 26 precursor 
CCL3L1                0.033   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL18                 0.033   small inducible cytokine A18 precursor 
CCL3L3                0.033   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL4L1                0.027   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.027   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL14                 0.016   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
TGFBR1                0.016   transforming growth factor, beta receptor I isoform 1...
TGFBR1                0.016   transforming growth factor, beta receptor I isoform...
GFRA3                 0.016   GDNF family receptor alpha 3 preproprotein 
CCL14                 0.011   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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