Guide to the Human Genome
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Name: CXCL11 Sequence: fasta or formatted (94aa) NCBI GI: 4885589
Description:

small inducible cytokine B11 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5          8           1
 C cysteine            5.3          5           1
 D aspartate           2.1          2           1
 E glutamate           4.3          4           1
 F phenylalanine       3.2          3           1
 G glycine             6.4          6           1
 H histidine           0.0          0           0
 I isoleucine         10.6         10           2
 K lysine             13.8         13           2
 L leucine             6.4          6           1
 M methionine          4.3          4           1
 N asparagine          5.3          5           2
 P proline             4.3          4           1
 Q glutamine           3.2          3           1
 R arginine            5.3          5           1
 S serine              4.3          4           1
 T threonine           2.1          2           1
 V valine              9.6          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine B11 precursor 
CXCL9                 0.244   small inducible cytokine B9 precursor 
CXCL10                0.220   small inducible cytokine B10 precursor 
CXCL2                 0.110   chemokine (C-X-C motif) ligand 2 
CXCL3                 0.110   chemokine (C-X-C motif) ligand 3 
CXCL1                 0.079   chemokine (C-X-C motif) ligand 1 
PPBP                  0.073   pro-platelet basic protein precursor 
CXCL6                 0.061   chemokine (C-X-C motif) ligand 6 (granulocyte chemota...
IL8                   0.049   interleukin 8 precursor 
CXCL5                 0.049   chemokine (C-X-C motif) ligand 5 precursor 
CXCL14                0.049   small inducible cytokine B14 precursor 
CXCL12                0.043   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CCL5                  0.037   small inducible cytokine A5 precursor 
CXCL13                0.030   chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac...
CXCL12                0.030   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.030   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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