Search of human proteins with 4506667

Search of human proteins with 4506667

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506667 ribosomal protein P0 [Homo sapiens]
         (317 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506667 ribosomal protein P0 [Homo sapiens]                        619   e-177
gi|16933546 ribosomal protein P0 [Homo sapiens]                       619   e-177
gi|18490987 mRNA turnover 4 homolog [Homo sapiens]                     60   2e-09
gi|4506671 ribosomal protein P2 [Homo sapiens]                         54   2e-07
gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]               51   1e-06
gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]              51   1e-06
gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]            42   5e-04
gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo ...    42   5e-04
gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo ...    42   5e-04
gi|19111150 angiomotin isoform 2 [Homo sapiens]                        36   0.051
gi|166064029 angiomotin isoform 1 [Homo sapiens]                       36   0.051
gi|28274705 family with sequence similarity 9, member A [Homo sa...    35   0.067
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]    32   0.57 
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]    32   0.57 
gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yea...    31   1.3  
gi|16418457 solute carrier family 26, member 8 isoform a [Homo s...    31   1.3  
gi|148762982 hypothetical protein LOC387640 [Homo sapiens]             31   1.3  
gi|24497556 homeobox A7 [Homo sapiens]                                 31   1.7  
gi|215820652 StAR-related lipid transfer (START) domain containi...    31   1.7  
gi|215820650 StAR-related lipid transfer (START) domain containi...    31   1.7  
gi|31543659 StAR-related lipid transfer (START) domain containin...    31   1.7  
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         31   1.7  
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap...    30   2.2  
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap...    30   2.2  
gi|239749940 PREDICTED: similar to deformed epidermal autoregula...    30   2.2  
gi|31543543 retinoic acid induced 17 [Homo sapiens]                    30   2.2  
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          30   2.2  
gi|224591419 zinc finger and BTB domain containing 8B [Homo sapi...    30   3.7  
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    30   3.7  
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    30   3.7  

>gi|4506667 ribosomal protein P0 [Homo sapiens]
          Length = 317

 Score =  619 bits (1596), Expect = e-177
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
           MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1   MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 61  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
           MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
Sbjct: 61  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
           VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
           SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA 300
           IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA 300

Query: 301 KEESEESDEDMGFGLFD 317
           KEESEESDEDMGFGLFD
Sbjct: 301 KEESEESDEDMGFGLFD 317


>gi|16933546 ribosomal protein P0 [Homo sapiens]
          Length = 317

 Score =  619 bits (1596), Expect = e-177
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
           MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1   MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 61  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
           MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
Sbjct: 61  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
           VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
           SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA 300
           IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA 300

Query: 301 KEESEESDEDMGFGLFD 317
           KEESEESDEDMGFGLFD
Sbjct: 301 KEESEESDEDMGFGLFD 317


>gi|18490987 mRNA turnover 4 homolog [Homo sapiens]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 4/191 (2%)

Query: 10  KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
           K N   ++ + +D Y   FI    N+ + +++ IR + +   +   GKN +M  A+    
Sbjct: 23  KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81

Query: 70  --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTV-PAQ 126
             E    L ++   +RG VG +FT     E+ +          ARAG  A   V++ P  
Sbjct: 82  SDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKAAFTVSLDPGP 141

Query: 127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFG 186
                       + LG+ T + RG + +LSD ++ K GD +   +A +L +       F 
Sbjct: 142 LEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFK 201

Query: 187 LVIQQVFDNGS 197
           + I+ ++D+ S
Sbjct: 202 VTIKYMWDSQS 212


>gi|4506671 ribosomal protein P2 [Homo sapiens]
          Length = 115

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 33/54 (61%), Positives = 36/54 (66%), Gaps = 5/54 (9%)

Query: 269 LADPSAFVAAAPVAAATTAAPAAAAAPA-----KVEAKEESEESDEDMGFGLFD 317
           LA   A  A A  AA  +AAPAA +APA     K E KEESEESD+DMGFGLFD
Sbjct: 62  LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]
          Length = 114

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 32/46 (69%), Positives = 34/46 (73%), Gaps = 7/46 (15%)

Query: 279 APVAAATTA---APAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317
           AP A A  A   AP+ AAAPA   KVEAK EESEESD+DMGFGLFD
Sbjct: 69  APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]
          Length = 89

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 32/46 (69%), Positives = 34/46 (73%), Gaps = 7/46 (15%)

Query: 279 APVAAATTA---APAAAAAPA---KVEAK-EESEESDEDMGFGLFD 317
           AP A A  A   AP+ AAAPA   KVEAK EESEESD+DMGFGLFD
Sbjct: 44  APAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 89


>gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 272 PSAFVAAAPVAAATTAAPAAAAAPAKVEAK-EESEESDEDMGFGLFD 317
           P+  V AAP         AA A   KVE K EE EE D+DM FGLFD
Sbjct: 107 PAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo
           sapiens]
          Length = 153

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 272 PSAFVAAAPVAAATTAAPAAAAAPAKVEAK-EESEESDEDMGFGLFD 317
           P+  V AAP         AA A   KVE K EE EE D+DM FGLFD
Sbjct: 107 PAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo
           sapiens]
          Length = 153

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 272 PSAFVAAAPVAAATTAAPAAAAAPAKVEAK-EESEESDEDMGFGLFD 317
           P+  V AAP         AA A   KVE K EE EE D+DM FGLFD
Sbjct: 107 PAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|19111150 angiomotin isoform 2 [Homo sapiens]
          Length = 675

 Score = 35.8 bits (81), Expect = 0.051
 Identities = 18/28 (64%), Positives = 20/28 (71%)

Query: 273 SAFVAAAPVAAATTAAPAAAAAPAKVEA 300
           +  VAAAPVA A  AAPAAAAAP+   A
Sbjct: 496 TTMVAAAPVAVAAAAAPAAAAAPSPATA 523


>gi|166064029 angiomotin isoform 1 [Homo sapiens]
          Length = 1084

 Score = 35.8 bits (81), Expect = 0.051
 Identities = 18/28 (64%), Positives = 20/28 (71%)

Query: 273 SAFVAAAPVAAATTAAPAAAAAPAKVEA 300
           +  VAAAPVA A  AAPAAAAAP+   A
Sbjct: 905 TTMVAAAPVAVAAAAAPAAAAAPSPATA 932


>gi|28274705 family with sequence similarity 9, member A [Homo
           sapiens]
          Length = 332

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 261 LAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDED 310
           +AEK K   A+ +   AAA  AAA   A AAAA    VE +EE E+ +E+
Sbjct: 182 IAEKQKDDEAEEAEAAAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEE 231



 Score = 28.9 bits (63), Expect = 6.3
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 257 YTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKE----ESEESDE 309
           +T  L   +K ++A+      A    AA  AA AAAAA A   A E    E EE +E
Sbjct: 170 HTRKLLNVLKEYIAEKQKDDEAEEAEAAAAAAEAAAAAEAAAAAAEVIVVEDEEEEE 226


>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 250 ALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESE 305
           A SV T YT P     K     P    AA P + AT  +PA AA PA     EE++
Sbjct: 504 AASVIT-YTAPPRPPKKREYPPPPPEPAATPTSPATAVSPATAAGPAMATTTEEAK 558


>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 250 ALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESE 305
           A SV T YT P     K     P    AA P + AT  +PA AA PA     EE++
Sbjct: 504 AASVIT-YTAPPRPPKKREYPPPPPEPAATPTSPATAVSPATAAGPAMATTTEEAK 558


>gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yeast)
           [Homo sapiens]
          Length = 545

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/31 (54%), Positives = 18/31 (58%)

Query: 270 ADPSAFVAAAPVAAATTAAPAAAAAPAKVEA 300
           A  +A  AAAP AA    APAA AAPA   A
Sbjct: 18  APVTAAAAAAPAAATAAPAPAAPAAPAPAPA 48


>gi|16418457 solute carrier family 26, member 8 isoform a [Homo
           sapiens]
          Length = 970

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 172 ATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLH----SRFLEGVRNVASVCL 227
           A L+N+L +SPF+ G ++   F       P  L    ++L     + FL G+  +    L
Sbjct: 156 ALLINVLKVSPFNNGQLVMGSFVKNEFSAPSYLMGYNKSLSVVATTTFLTGIIQLIMGVL 215

Query: 228 QIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
            +G+     +P S ++ Y   +AL +       +   + +F A P +F
Sbjct: 216 GLGF-IATYLPESAMSAYLAAVALHIMLSQLTFIFGIMISFHAGPISF 262


>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
          Length = 908

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 258 TFPLAEKVKAFLADPSAF---------VAAAPVAAATTAAPAAAAAPAKVEAKEESEESD 308
           T PL     AF +DP+ F          AAA  AAA  AA AAAAA A  +      +  
Sbjct: 197 TAPLQGNYVAFPSDPAYFRSLLCSKHPAAAAAAAAAAAAAAAAAAAAAYYQVSAAGPQPK 256

Query: 309 EDMGFG 314
              G G
Sbjct: 257 AAAGAG 262


>gi|24497556 homeobox A7 [Homo sapiens]
          Length = 230

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 271 DPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDED 310
           D     AAAP  A  +AA  AAA  A  E  +E EE +E+
Sbjct: 191 DEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE 230


>gi|215820652 StAR-related lipid transfer (START) domain containing
           8 isoform b [Homo sapiens]
          Length = 1023

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 262 AEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGF 313
           AE   A LA   A   A PVA     APA A APA  +  E+   S  +  F
Sbjct: 378 AEVQPAVLAPAQAPAEAEPVAQEEAEAPAPAPAPAPAQDSEQEAHSGGEPTF 429


>gi|215820650 StAR-related lipid transfer (START) domain containing
           8 isoform a [Homo sapiens]
          Length = 1103

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 262 AEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGF 313
           AE   A LA   A   A PVA     APA A APA  +  E+   S  +  F
Sbjct: 458 AEVQPAVLAPAQAPAEAEPVAQEEAEAPAPAPAPAPAQDSEQEAHSGGEPTF 509


>gi|31543659 StAR-related lipid transfer (START) domain containing 8
           isoform b [Homo sapiens]
          Length = 1023

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/52 (38%), Positives = 23/52 (44%)

Query: 262 AEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGF 313
           AE   A LA   A   A PVA     APA A APA  +  E+   S  +  F
Sbjct: 378 AEVQPAVLAPAQAPAEAEPVAQEEAEAPAPAPAPAPAQDSEQEAHSGGEPTF 429


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 263 EKVKAFLADPSAFVAAAPVAAATTA----APAAAAAPAKVEAKEESEESDEDM 311
           +K KA  A  +A V  A +AAATT      P AA  P K E + E+E++ +D+
Sbjct: 832 KKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEPKK-ETESEAEDNLDDL 883


>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
           sapiens]
          Length = 565

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 269 LADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDED 310
           LA+ +A  AAA VAAA  AA A   A   V +++E  E D D
Sbjct: 13  LAEAAAVAAAAAVAAAAAAA-AGGEAEEPVLSRDEDSEEDAD 53


>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
           sapiens]
          Length = 288

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 270 ADPSA--FVAAAPVAAATTAAPAAAAAPAKV 298
           ADPSA    AA+P+AA   AA  AA APA V
Sbjct: 169 ADPSAASLCAASPLAAVPAAASPAAVAPAAV 199


>gi|239749940 PREDICTED: similar to deformed epidermal
           autoregulatory factor 1 [Homo sapiens]
          Length = 426

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 269 LADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDED 310
           LA+ +A  AAA VAAA  AA A   A   V +++E  E D D
Sbjct: 13  LAEAAAVAAAAAVAAAAAAA-AGGEAEEPVLSRDEDSEEDAD 53


>gi|31543543 retinoic acid induced 17 [Homo sapiens]
          Length = 1067

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 267 AFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESD 308
           A    P+A  AAA VAAA  AA A A A A V A +E++  D
Sbjct: 274 ADFTQPAAAAAAAAVAAA--AATATATATATVAALQETQNKD 313


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 273 SAFVAAAPVAAATTAAPAAAAAPA 296
           +A +AAA  AAA  AA AAAAAPA
Sbjct: 496 AAAIAAAAAAAAAAAAAAAAAAPA 519



 Score = 29.6 bits (65), Expect = 3.7
 Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 267 AFLADPSAFVAAAP-VAAATTAAPAAAAAPAKVEA 300
           A  A P+   AAAP +AAA   APA AAAPA   A
Sbjct: 523 AAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAA 557



 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 267 AFLADPSAFVAAAPVAAATTAAPAAAAAPA 296
           A  A P+   AAAP A A  AAPA AAAPA
Sbjct: 531 AAAAAPALAAAAAP-APAPAAAPAVAAAPA 559


>gi|224591419 zinc finger and BTB domain containing 8B [Homo
           sapiens]
          Length = 495

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 271 DPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEES 304
           +  A VAAA  AAA  AA AAAAA  +V+++  S
Sbjct: 129 EKEAAVAAAVAAAAAAAAAAAAAAAHQVDSESPS 162


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 272 PSAFVAAAPVAAATTA-----APAAAAAPAKVEAKEESEESDEDMG 312
           P+   A APVAA   A     APA A APA   A +ES E   + G
Sbjct: 175 PAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 272 PSAFVAAAPVAAATTA-----APAAAAAPAKVEAKEESEESDEDMG 312
           P+   A APVAA   A     APA A APA   A +ES E   + G
Sbjct: 175 PAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQG 220


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,671,732
Number of Sequences: 37866
Number of extensions: 425402
Number of successful extensions: 3321
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3000
Number of HSP's gapped (non-prelim): 248
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.