Guide to the Human Genome
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Name: RPLP0 Sequence: fasta or formatted (317aa) NCBI GI: 16933546
Description:

ribosomal protein P0

Referenced in:

Ribosomes

Other entries for this name:
alt mRNA [317aa] ribosomal protein P0
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         38           5
 C cysteine            0.9          3           1
 D aspartate           4.7         15           2
 E glutamate           6.6         21           2
 F phenylalanine       4.7         15           2
 G glycine             6.6         21           1
 H histidine           1.3          4           1
 I isoleucine          6.3         20           2
 K lysine              6.0         19           1
 L leucine             9.1         29           2
 M methionine          2.8          9           2
 N asparagine          4.4         14           2
 P proline             5.4         17           1
 Q glutamine           3.2         10           2
 R arginine            4.1         13           1
 S serine              5.7         18           1
 T threonine           6.0         19           2
 V valine              7.9         25           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein P0 
RPLP0                 1.000   ribosomal protein P0 
MRTO4                 0.059   mRNA turnover 4 homolog 
RPLP2                 0.049   ribosomal protein P2 
RPLP1                 0.044   ribosomal protein P1 isoform 1 
RPLP1                 0.044   ribosomal protein P1 isoform 2 
LOC100293508          0.029   PREDICTED: hypothetical protein 
LOC100290313          0.029   PREDICTED: hypothetical protein XP_002347460 
LOC100289389          0.029   PREDICTED: hypothetical protein XP_002343314 
AMOT                  0.019   angiomotin isoform 2 
AMOT                  0.019   angiomotin isoform 1 
FAM9A                 0.017   family with sequence similarity 9, member A 
ZBTB4                 0.012   zinc finger and BTB domain containing 4 
ZBTB4                 0.012   zinc finger and BTB domain containing 4 
STK39                 0.010   serine threonine kinase 39 (STE20/SPS1 homolog, yea...
SLC26A8               0.010   solute carrier family 26, member 8 isoform a 
C10orf140             0.010   hypothetical protein LOC387640 
HOXA7                 0.010   homeobox A7 
STARD8                0.010   StAR-related lipid transfer (START) domain containi...
STARD8                0.010   StAR-related lipid transfer (START) domain containi...
STARD8                0.010   StAR-related lipid transfer (START) domain containin...
SRRM1                 0.010   serine/arginine repetitive matrix 1 
DEAF1                 0.008   deformed epidermal autoregulatory factor 1 
KRTAP4-6              0.008   PREDICTED: keratin associated protein 4.6 
LOC100294411          0.008   PREDICTED: similar to deformed epidermal autoregula...
ZMIZ1                 0.008   retinoic acid induced 17 
FAM48B1               0.008   hypothetical protein LOC100130302 
ZBTB8B                0.008   zinc finger and BTB domain containing 8B 
CDKN1C                0.008   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.008   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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