Guide to the Human Genome
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Name: RPLP1 Sequence: fasta or formatted (89aa) NCBI GI: 47524167
Description:

ribosomal protein P1 isoform 2

Referenced in:

Ribosomes

Other entries for this name:
alt prot [114aa] ribosomal protein P1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.2         18           3
 C cysteine            2.2          2           1
 D aspartate           6.7          6           3
 E glutamate          10.1          9           2
 F phenylalanine       2.2          2           1
 G glycine            10.1          9           2
 H histidine           1.1          1           1
 I isoleucine          4.5          4           1
 K lysine              4.5          4           2
 L leucine             6.7          6           1
 M methionine          2.2          2           1
 N asparagine          3.4          3           1
 P proline             6.7          6           1
 Q glutamine           0.0          0           0
 R arginine            0.0          0           0
 S serine              7.9          7           1
 T threonine           3.4          3           1
 V valine              6.7          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein P1 isoform 2 
RPLP1                 0.908   ribosomal protein P1 isoform 1 
LOC100293508          0.684   PREDICTED: hypothetical protein 
LOC100290313          0.684   PREDICTED: hypothetical protein XP_002347460 
LOC100289389          0.684   PREDICTED: hypothetical protein XP_002343314 
RPLP2                 0.243   ribosomal protein P2 
RPLP0                 0.171   ribosomal protein P0 
RPLP0                 0.171   ribosomal protein P0 
CDKN1C                0.092   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.092   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.092   cyclin-dependent kinase inhibitor 1C isoform a 
MYL1                  0.086   fast skeletal myosin alkali light chain 1 isoform 1f...
AEBP2                 0.079   AE binding protein 2 isoform b 
AEBP2                 0.079   AE binding protein 2 isoform a 
MXRA7                 0.072   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.072   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.072   transmembrane anchor protein 1 isoform 1 
ZBTB3                 0.066   zinc finger and BTB domain containing 3 
CASZ1                 0.066   castor homolog 1, zinc finger isoform a 
GRIN2D                0.046   N-methyl-D-aspartate receptor subunit 2D precursor ...
PDE4A                 0.046   phosphodiesterase 4A isoform 3 
PDE4A                 0.046   phosphodiesterase 4A isoform 2 
PDE4A                 0.046   phosphodiesterase 4A isoform 1 
MYL4                  0.046   atrial/embryonic alkali myosin light chain 
MYL4                  0.046   atrial/embryonic alkali myosin light chain 
SOX12                 0.046   SRY (sex determining region Y)-box 12 
LOC100291383          0.039   PREDICTED: hypothetical protein XP_002346891 
KIAA1543              0.039   NEZHA isoform 2 
KIAA1543              0.039   NEZHA isoform 1 
MAP7                  0.039   microtubule-associated protein 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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