Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC26A8 Sequence: fasta or formatted (970aa) NCBI GI: 16418457
Description:

solute carrier family 26, member 8 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [865aa] solute carrier family 26, member 8 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         51           2
 C cysteine            2.1         20           2
 D aspartate           3.5         34           2
 E glutamate           5.9         57           3
 F phenylalanine       6.0         58           2
 G glycine             4.6         45           2
 H histidine           2.1         20           2
 I isoleucine          8.1         79           2
 K lysine              3.6         35           2
 L leucine            10.7        104           3
 M methionine          3.0         29           2
 N asparagine          4.8         47           2
 P proline             4.6         45           2
 Q glutamine           4.5         44           2
 R arginine            4.3         42           3
 S serine             11.1        108           3
 T threonine           5.1         49           3
 V valine              6.6         64           3
 W tryptophan          0.8          8           1
 Y tyrosine            3.2         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 26, member 8 isoform a 
SLC26A8               0.673   solute carrier family 26, member 8 isoform b 
SLC26A6               0.184   solute carrier family 26, member 6 isoform 1 
SLC26A6               0.183   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.183   solute carrier family 26, member 6 isoform 2 
SLC26A6               0.171   solute carrier family 26, member 6 isoform 3 
SLC26A3               0.153   solute carrier family 26, member 3 
SLC26A9               0.149   solute carrier family 26, member 9 isoform a 
SLC26A9               0.149   solute carrier family 26, member 9 isoform b 
SLC26A4               0.141   pendrin 
SLC26A5               0.136   prestin isoform b 
SLC26A5               0.136   prestin isoform a 
SLC26A2               0.120   solute carrier family 26 member 2 
SLC26A5               0.118   prestin isoform c 
SLC26A1               0.110   solute carrier family 26, member 1 isoform a 
SLC26A1               0.110   solute carrier family 26, member 1 isoform a 
SLC26A7               0.090   solute carrier family 26, member 7 isoform a 
SLC26A7               0.090   solute carrier family 26, member 7 isoform b 
SLC26A9               0.074   solute carrier family 26, member 9 isoform c 
SLC26A10              0.070   solute carrier family 26, member 10 
SLC26A11              0.053   solute carrier family 26, member 11 
SLC26A5               0.051   prestin isoform d 
SLC26A1               0.021   solute carrier family 26, member 1 isoform b 
NOL3                  0.014   nucleolar protein 3 
PNN                   0.010   pinin, desmosome associated protein 
TRIM44                0.010   DIPB protein 
PHLDA1                0.010   pleckstrin homology-like domain, family A, member 1 ...
GNAS                  0.010   GNAS complex locus NESP55 
BAT2D1                0.010   HBxAg transactivated protein 2 
CIZ1                  0.009   CDKN1A interacting zinc finger protein 1 isoform 4 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press